dbCAN Logo

Cluster: Rep_2060_CGC21

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_2060_c_9 Rep_2060_c_9_44 41016 42752 + 3.A.1.135.9
TC Rep_2060_c_9 Rep_2060_c_9_45 42749 44581 + 3.A.1.135.9
NULL(UNKNOWN) Rep_2060_c_9 Rep_2060_c_9_46 44551 44742 - NULL(UNKNOWN)
[View Structural Homologs]
pfam Rep_2060_c_9 Rep_2060_c_9_47 44804 45634 - AlkZ-rel
CAZyme Rep_2060_c_9 Rep_2060_c_9_48 45721 48066 - GH129
CAZyme Rep_2060_c_9 Rep_2060_c_9_49 48358 51153 - GH3
TF Rep_2060_c_9 Rep_2060_c_9_50 51588 52478 + HTH_AraC | HTH_AraC
TC Rep_2060_c_9 Rep_2060_c_9_51 52758 54545 - 3.A.1.135.7
TC Rep_2060_c_9 Rep_2060_c_9_52 54542 56281 - 3.A.1.135.7
Gene ID: Rep_2060_c_9_44
Type: TC
Location: 41016 - 42752 (+)
Gene ID: Rep_2060_c_9_45
Type: TC
Location: 42749 - 44581 (+)
Gene ID: Rep_2060_c_9_46
Type:
Location: 44551 - 44742 (-)
Gene ID: Rep_2060_c_9_47
Type: pfam
Location: 44804 - 45634 (-)
Gene ID: Rep_2060_c_9_48
Type: CAZyme
Location: 45721 - 48066 (-)
Gene ID: Rep_2060_c_9_49
Type: CAZyme
Location: 48358 - 51153 (-)
Gene ID: Rep_2060_c_9_50
Type: TF
Location: 51588 - 52478 (+)
Gene ID: Rep_2060_c_9_51
Type: TC
Location: 52758 - 54545 (-)
Gene ID: Rep_2060_c_9_52
Type: TC
Location: 54542 - 56281 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

← Back to Cluster List