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Cluster: Rep_2060_CGC20

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_2060_c_9 Rep_2060_c_9_25 19481 21103 - 8.A.7.1.1
STP Rep_2060_c_9 Rep_2060_c_9_26 21197 21454 - PTS-HPr
CAZyme Rep_2060_c_9 Rep_2060_c_9_27 21458 22891 - GH1
TC Rep_2060_c_9 Rep_2060_c_9_28 22903 24972 - 4.A.1.2.6
pfam Rep_2060_c_9 Rep_2060_c_9_29 25060 25905 - PRD | PRD | CAT_RBD
TF Rep_2060_c_9 Rep_2060_c_9_30 26258 27073 + MerR
TC Rep_2060_c_9 Rep_2060_c_9_31 27192 28526 + 2.A.66.1.32
NULL(UNKNOWN) Rep_2060_c_9 Rep_2060_c_9_32 28703 29197 + NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_2060_c_9 Rep_2060_c_9_33 29203 30486 - 2.A.1.21.23
Gene ID: Rep_2060_c_9_25
Type: TC
Location: 19481 - 21103 (-)
Gene ID: Rep_2060_c_9_26
Type: STP
Location: 21197 - 21454 (-)
Gene ID: Rep_2060_c_9_27
Type: CAZyme
Location: 21458 - 22891 (-)
Gene ID: Rep_2060_c_9_28
Type: TC
Location: 22903 - 24972 (-)
Gene ID: Rep_2060_c_9_29
Type: pfam
Location: 25060 - 25905 (-)
Gene ID: Rep_2060_c_9_30
Type: TF
Location: 26258 - 27073 (+)
Gene ID: Rep_2060_c_9_31
Type: TC
Location: 27192 - 28526 (+)
Gene ID: Rep_2060_c_9_32
Type:
Location: 28703 - 29197 (+)
Gene ID: Rep_2060_c_9_33
Type: TC
Location: 29203 - 30486 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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