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Cluster: Rep_2060_CGC19

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_2060_c_8 Rep_2060_c_8_6 11171 13327 - GH112
pfam Rep_2060_c_8 Rep_2060_c_8_7 13368 13547 - DUF6903
TC Rep_2060_c_8 Rep_2060_c_8_8 13561 14445 - 3.A.1.1.18
TC Rep_2060_c_8 Rep_2060_c_8_9 14460 15359 - 3.A.1.1.20
STP Rep_2060_c_8 Rep_2060_c_8_10 15457 16911 - SBP_bac_1
TF Rep_2060_c_8 Rep_2060_c_8_11 17315 18139 + HTH_AraC | HTH_AraC
TC Rep_2060_c_8 Rep_2060_c_8_12 18428 19807 - 3.A.1.122.2
NULL(UNKNOWN) Rep_2060_c_8 Rep_2060_c_8_13 19825 21510 - NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_2060_c_8 Rep_2060_c_8_14 21574 22287 - 3.A.1.122.14
Gene ID: Rep_2060_c_8_6
Type: CAZyme
Location: 11171 - 13327 (-)
Gene ID: Rep_2060_c_8_7
Type: pfam
Location: 13368 - 13547 (-)
Gene ID: Rep_2060_c_8_8
Type: TC
Location: 13561 - 14445 (-)
Gene ID: Rep_2060_c_8_9
Type: TC
Location: 14460 - 15359 (-)
Gene ID: Rep_2060_c_8_10
Type: STP
Location: 15457 - 16911 (-)
Gene ID: Rep_2060_c_8_11
Type: TF
Location: 17315 - 18139 (+)
Gene ID: Rep_2060_c_8_12
Type: TC
Location: 18428 - 19807 (-)
Gene ID: Rep_2060_c_8_13
Type:
Location: 19825 - 21510 (-)
Gene ID: Rep_2060_c_8_14
Type: TC
Location: 21574 - 22287 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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