Cluster: Rep_2060_CGC15
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_2060
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_2060_c_5 | Rep_2060_c_5_16 | 15008 | 16810 | - | 8.A.59.2.1 |
| pfam | Rep_2060_c_5 | Rep_2060_c_5_17 | 17159 | 23749 | + | Big_2 | FIVAR | FIVAR | FIVAR | FIVAR |
| TC | Rep_2060_c_5 | Rep_2060_c_5_18 | 23949 | 25307 | + | 3.A.1.1.28 |
| TC | Rep_2060_c_5 | Rep_2060_c_5_19 | 25375 | 26283 | + | 3.A.1.1.7 |
| TC | Rep_2060_c_5 | Rep_2060_c_5_20 | 26283 | 27119 | + | 3.A.1.1.36 |
| CAZyme | Rep_2060_c_5 | Rep_2060_c_5_21 | 27129 | 28883 | + | GH36 |
Gene ID: Rep_2060_c_5_16
Type: TC
Location: 15008 - 16810 (-)
Type: TC
Location: 15008 - 16810 (-)
Gene ID: Rep_2060_c_5_17
Type: pfam
Location: 17159 - 23749 (+)
Type: pfam
Location: 17159 - 23749 (+)
Gene ID: Rep_2060_c_5_18
Type: TC
Location: 23949 - 25307 (+)
Type: TC
Location: 23949 - 25307 (+)
Gene ID: Rep_2060_c_5_19
Type: TC
Location: 25375 - 26283 (+)
Type: TC
Location: 25375 - 26283 (+)
Gene ID: Rep_2060_c_5_20
Type: TC
Location: 26283 - 27119 (+)
Type: TC
Location: 26283 - 27119 (+)
Gene ID: Rep_2060_c_5_21
Type: CAZyme
Location: 27129 - 28883 (+)
Type: CAZyme
Location: 27129 - 28883 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Robinsoniella
Species
Robinsoniella sp900539655
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.