Cluster: Rep_2060_CGC130
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_2060
- CGC Family ID: CGCFAM_02098
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_2060_c_171 | Rep_2060_c_171_3 | 3229 | 4125 | + | 3.A.1.1.45 |
| TC | Rep_2060_c_171 | Rep_2060_c_171_4 | 4125 | 4955 | + | 3.A.1.1.45 |
| CAZyme | Rep_2060_c_171 | Rep_2060_c_171_5 | 4960 | 6627 | + | GH13_31 |
| pfam | Rep_2060_c_171 | Rep_2060_c_171_6 | 7052 | 8254 | + | Cons_hypoth95 | MTS | PrmA | Methyltransf_15 | Methyltrans_SAM | Methyltransf_25 | Methyltransf_31 | PUA_3 |
| TC | Rep_2060_c_171 | Rep_2060_c_171_7 | 8732 | 9775 | + | 2.A.66.1.32 |
Gene ID: Rep_2060_c_171_3
Type: TC
Location: 3229 - 4125 (+)
Type: TC
Location: 3229 - 4125 (+)
Gene ID: Rep_2060_c_171_4
Type: TC
Location: 4125 - 4955 (+)
Type: TC
Location: 4125 - 4955 (+)
Gene ID: Rep_2060_c_171_5
Type: CAZyme
Location: 4960 - 6627 (+)
Type: CAZyme
Location: 4960 - 6627 (+)
Gene ID: Rep_2060_c_171_6
Type: pfam
Location: 7052 - 8254 (+)
Type: pfam
Location: 7052 - 8254 (+)
Gene ID: Rep_2060_c_171_7
Type: TC
Location: 8732 - 9775 (+)
Type: TC
Location: 8732 - 9775 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Robinsoniella
Species
Robinsoniella sp900539655
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.