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Cluster: Rep_2060_CGC13

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_2060_c_4 Rep_2060_c_4_51 53395 59484 - GH29
pfam Rep_2060_c_4 Rep_2060_c_4_52 59686 60891 - Peripla_BP_1 | Peripla_BP_4
TC Rep_2060_c_4 Rep_2060_c_4_53 60984 61973 - 3.A.1.2.11
TC Rep_2060_c_4 Rep_2060_c_4_54 61992 63485 - 3.A.1.2.20
TC Rep_2060_c_4 Rep_2060_c_4_55 63825 64811 - 3.A.1.2.20
TC Rep_2060_c_4 Rep_2060_c_4_56 64798 66606 - 8.A.59.2.1
TF Rep_2060_c_4 Rep_2060_c_4_57 66610 68214 - HTH_AraC | HTH_AraC
TC Rep_2060_c_4 Rep_2060_c_4_58 68337 69386 - 2.A.86.1.3
pfam Rep_2060_c_4 Rep_2060_c_4_59 69553 70227 - PseudoU_synth_2
pfam Rep_2060_c_4 Rep_2060_c_4_60 70252 70836 - Methyltransf_5 | rRNA_methylase | Methyltransf_31
TC Rep_2060_c_4 Rep_2060_c_4_61 71040 71975 + 2.A.19.5.2
NULL(UNKNOWN) Rep_2060_c_4 Rep_2060_c_4_62 72050 72802 - NULL(UNKNOWN)
[View Structural Homologs]
NULL(UNKNOWN) Rep_2060_c_4 Rep_2060_c_4_63 72816 73571 - NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_2060_c_4 Rep_2060_c_4_64 73583 74431 - 3.A.1.132.1
Gene ID: Rep_2060_c_4_51
Type: CAZyme
Location: 53395 - 59484 (-)
Gene ID: Rep_2060_c_4_52
Type: pfam
Location: 59686 - 60891 (-)
Gene ID: Rep_2060_c_4_53
Type: TC
Location: 60984 - 61973 (-)
Gene ID: Rep_2060_c_4_54
Type: TC
Location: 61992 - 63485 (-)
Gene ID: Rep_2060_c_4_55
Type: TC
Location: 63825 - 64811 (-)
Gene ID: Rep_2060_c_4_56
Type: TC
Location: 64798 - 66606 (-)
Gene ID: Rep_2060_c_4_57
Type: TF
Location: 66610 - 68214 (-)
Gene ID: Rep_2060_c_4_58
Type: TC
Location: 68337 - 69386 (-)
Gene ID: Rep_2060_c_4_59
Type: pfam
Location: 69553 - 70227 (-)
Gene ID: Rep_2060_c_4_60
Type: pfam
Location: 70252 - 70836 (-)
Gene ID: Rep_2060_c_4_61
Type: TC
Location: 71040 - 71975 (+)
Gene ID: Rep_2060_c_4_62
Type:
Location: 72050 - 72802 (-)
Gene ID: Rep_2060_c_4_63
Type:
Location: 72816 - 73571 (-)
Gene ID: Rep_2060_c_4_64
Type: TC
Location: 73583 - 74431 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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