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Cluster: Rep_2060_CGC123

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_2060_c_140 Rep_2060_c_140_3 2687 4795 - GH3
CAZyme Rep_2060_c_140 Rep_2060_c_140_4 4864 7062 - GH3
NULL(UNKNOWN) Rep_2060_c_140 Rep_2060_c_140_5 7197 7778 - NULL(UNKNOWN)
[View Structural Homologs]
TF Rep_2060_c_140 Rep_2060_c_140_6 8165 9724 - HTH_AraC | HTH_AraC
TC Rep_2060_c_140 Rep_2060_c_140_7 9725 11575 - 8.A.59.2.1
TC Rep_2060_c_140 Rep_2060_c_140_8 11660 12508 - 3.A.1.1.34
TC Rep_2060_c_140 Rep_2060_c_140_9 12512 13414 - 3.A.1.1.7
TC Rep_2060_c_140 Rep_2060_c_140_10 13483 14907 - 3.A.1.1.9
Gene ID: Rep_2060_c_140_3
Type: CAZyme
Location: 2687 - 4795 (-)
Gene ID: Rep_2060_c_140_4
Type: CAZyme
Location: 4864 - 7062 (-)
Gene ID: Rep_2060_c_140_5
Type:
Location: 7197 - 7778 (-)
Gene ID: Rep_2060_c_140_6
Type: TF
Location: 8165 - 9724 (-)
Gene ID: Rep_2060_c_140_7
Type: TC
Location: 9725 - 11575 (-)
Gene ID: Rep_2060_c_140_8
Type: TC
Location: 11660 - 12508 (-)
Gene ID: Rep_2060_c_140_9
Type: TC
Location: 12512 - 13414 (-)
Gene ID: Rep_2060_c_140_10
Type: TC
Location: 13483 - 14907 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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