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Cluster: Rep_2060_CGC118

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_2060_c_128 Rep_2060_c_128_2 1273 3366 - GH52
STP Rep_2060_c_128 Rep_2060_c_128_3 3419 5191 - SBP_bac_1
TC Rep_2060_c_128 Rep_2060_c_128_4 5254 6150 - 3.A.1.1.29
TC Rep_2060_c_128 Rep_2060_c_128_5 6162 7088 - 3.A.1.1.29
STP Rep_2060_c_128 Rep_2060_c_128_6 7334 9151 - HATPase_c | dCache_1
TF Rep_2060_c_128 Rep_2060_c_128_7 9202 10761 - HTH_AraC | HTH_AraC
CAZyme Rep_2060_c_128 Rep_2060_c_128_8 10999 12444 - GH29
NULL(UNKNOWN) Rep_2060_c_128 Rep_2060_c_128_9 12458 13546 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_2060_c_128 Rep_2060_c_128_10 13550 15901 - GH3
Gene ID: Rep_2060_c_128_2
Type: CAZyme
Location: 1273 - 3366 (-)
Gene ID: Rep_2060_c_128_3
Type: STP
Location: 3419 - 5191 (-)
Gene ID: Rep_2060_c_128_4
Type: TC
Location: 5254 - 6150 (-)
Gene ID: Rep_2060_c_128_5
Type: TC
Location: 6162 - 7088 (-)
Gene ID: Rep_2060_c_128_6
Type: STP
Location: 7334 - 9151 (-)
Gene ID: Rep_2060_c_128_7
Type: TF
Location: 9202 - 10761 (-)
Gene ID: Rep_2060_c_128_8
Type: CAZyme
Location: 10999 - 12444 (-)
Gene ID: Rep_2060_c_128_9
Type:
Location: 12458 - 13546 (-)
Gene ID: Rep_2060_c_128_10
Type: CAZyme
Location: 13550 - 15901 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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