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Cluster: Rep_2060_CGC115

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_2060_c_121 Rep_2060_c_121_3 2146 2430 + 3.A.1.125.1
STP Rep_2060_c_121 Rep_2060_c_121_4 2403 2858 + HATPase_c
CAZyme Rep_2060_c_121 Rep_2060_c_121_5 2884 4152 - CBM6 | GH43_2
TF Rep_2060_c_121 Rep_2060_c_121_6 4503 5513 + LacI
CAZyme Rep_2060_c_121 Rep_2060_c_121_7 5822 7546 + GH78
TF Rep_2060_c_121 Rep_2060_c_121_8 7674 8684 + LacI
CAZyme Rep_2060_c_121 Rep_2060_c_121_9 8787 11861 + GH106
CAZyme Rep_2060_c_121 Rep_2060_c_121_10 11938 14463 + CBM67 | GH78
TC Rep_2060_c_121 Rep_2060_c_121_11 15206 16057 + 3.A.1.149.1
Gene ID: Rep_2060_c_121_3
Type: TC
Location: 2146 - 2430 (+)
Gene ID: Rep_2060_c_121_4
Type: STP
Location: 2403 - 2858 (+)
Gene ID: Rep_2060_c_121_5
Type: CAZyme
Location: 2884 - 4152 (-)
Gene ID: Rep_2060_c_121_6
Type: TF
Location: 4503 - 5513 (+)
Gene ID: Rep_2060_c_121_7
Type: CAZyme
Location: 5822 - 7546 (+)
Gene ID: Rep_2060_c_121_8
Type: TF
Location: 7674 - 8684 (+)
Gene ID: Rep_2060_c_121_9
Type: CAZyme
Location: 8787 - 11861 (+)
Gene ID: Rep_2060_c_121_10
Type: CAZyme
Location: 11938 - 14463 (+)
Gene ID: Rep_2060_c_121_11
Type: TC
Location: 15206 - 16057 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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