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Cluster: Rep_2060_CGC110

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_2060_c_101 Rep_2060_c_101_7 8010 10073 - GH42
CAZyme Rep_2060_c_101 Rep_2060_c_101_8 10202 12877 - GH106
CAZyme Rep_2060_c_101 Rep_2060_c_101_9 12951 15578 - CBM67 | GH78
STP Rep_2060_c_101 Rep_2060_c_101_10 15783 17447 - SBP_bac_1
TC Rep_2060_c_101 Rep_2060_c_101_11 17567 18460 - 3.A.1.1.10
TC Rep_2060_c_101 Rep_2060_c_101_12 18504 19460 - 3.A.1.1.10
TC Rep_2060_c_101 Rep_2060_c_101_13 19803 21620 + 8.A.59.2.1
TF Rep_2060_c_101 Rep_2060_c_101_14 21626 22381 + HTH_AraC
TC Rep_2060_c_101 Rep_2060_c_101_15 22385 24028 + 3.A.1.1.9
Gene ID: Rep_2060_c_101_7
Type: CAZyme
Location: 8010 - 10073 (-)
Gene ID: Rep_2060_c_101_8
Type: CAZyme
Location: 10202 - 12877 (-)
Gene ID: Rep_2060_c_101_9
Type: CAZyme
Location: 12951 - 15578 (-)
Gene ID: Rep_2060_c_101_10
Type: STP
Location: 15783 - 17447 (-)
Gene ID: Rep_2060_c_101_11
Type: TC
Location: 17567 - 18460 (-)
Gene ID: Rep_2060_c_101_12
Type: TC
Location: 18504 - 19460 (-)
Gene ID: Rep_2060_c_101_13
Type: TC
Location: 19803 - 21620 (+)
Gene ID: Rep_2060_c_101_14
Type: TF
Location: 21626 - 22381 (+)
Gene ID: Rep_2060_c_101_15
Type: TC
Location: 22385 - 24028 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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