Cluster: Rep_2060_CGC108
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_2060
- CGC Family ID: CGCFAM_04887
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_2060_c_95 | Rep_2060_c_95_6 | 5693 | 6577 | - | 3.A.1.1.29 |
| TC | Rep_2060_c_95 | Rep_2060_c_95_7 | 6589 | 7518 | - | 3.A.1.1.10 |
| STP | Rep_2060_c_95 | Rep_2060_c_95_8 | 7531 | 9069 | - | SBP_bac_1 |
| TF | Rep_2060_c_95 | Rep_2060_c_95_9 | 9222 | 10811 | - | HTH_AraC |
| TC | Rep_2060_c_95 | Rep_2060_c_95_10 | 10829 | 12550 | - | 9.B.33.1.2 |
| CAZyme | Rep_2060_c_95 | Rep_2060_c_95_11 | 12809 | 13930 | - | CE2 |
| peptidase | Rep_2060_c_95 | Rep_2060_c_95_12 | 13967 | 14950 | - | S09.UPW |
| pfam | Rep_2060_c_95 | Rep_2060_c_95_13 | 15121 | 16329 | - | Lipase_GDSL | Lipase_GDSL_2 |
| CAZyme | Rep_2060_c_95 | Rep_2060_c_95_14 | 16516 | 17814 | - | GH4 |
| TC | Rep_2060_c_95 | Rep_2060_c_95_15 | 17944 | 18825 | - | 3.A.1.1.9 |
| TC | Rep_2060_c_95 | Rep_2060_c_95_16 | 18841 | 19740 | - | 3.A.1.1.10 |
| TC | Rep_2060_c_95 | Rep_2060_c_95_17 | 19771 | 21444 | - | 3.A.1.1.9 |
| TC | Rep_2060_c_95 | Rep_2060_c_95_18 | 21724 | 23427 | + | 8.A.59.2.1 |
Gene ID: Rep_2060_c_95_6
Type: TC
Location: 5693 - 6577 (-)
Type: TC
Location: 5693 - 6577 (-)
Gene ID: Rep_2060_c_95_7
Type: TC
Location: 6589 - 7518 (-)
Type: TC
Location: 6589 - 7518 (-)
Gene ID: Rep_2060_c_95_8
Type: STP
Location: 7531 - 9069 (-)
Type: STP
Location: 7531 - 9069 (-)
Gene ID: Rep_2060_c_95_9
Type: TF
Location: 9222 - 10811 (-)
Type: TF
Location: 9222 - 10811 (-)
Gene ID: Rep_2060_c_95_10
Type: TC
Location: 10829 - 12550 (-)
Type: TC
Location: 10829 - 12550 (-)
Gene ID: Rep_2060_c_95_11
Type: CAZyme
Location: 12809 - 13930 (-)
Type: CAZyme
Location: 12809 - 13930 (-)
Gene ID: Rep_2060_c_95_12
Type: peptidase
Location: 13967 - 14950 (-)
Type: peptidase
Location: 13967 - 14950 (-)
Gene ID: Rep_2060_c_95_13
Type: pfam
Location: 15121 - 16329 (-)
Type: pfam
Location: 15121 - 16329 (-)
Gene ID: Rep_2060_c_95_14
Type: CAZyme
Location: 16516 - 17814 (-)
Type: CAZyme
Location: 16516 - 17814 (-)
Gene ID: Rep_2060_c_95_15
Type: TC
Location: 17944 - 18825 (-)
Type: TC
Location: 17944 - 18825 (-)
Gene ID: Rep_2060_c_95_16
Type: TC
Location: 18841 - 19740 (-)
Type: TC
Location: 18841 - 19740 (-)
Gene ID: Rep_2060_c_95_17
Type: TC
Location: 19771 - 21444 (-)
Type: TC
Location: 19771 - 21444 (-)
Gene ID: Rep_2060_c_95_18
Type: TC
Location: 21724 - 23427 (+)
Type: TC
Location: 21724 - 23427 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Robinsoniella
Species
Robinsoniella sp900539655
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.