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Cluster: Rep_2060_CGC106

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_2060_c_91 Rep_2060_c_91_5 4022 8941 + CBM35 | CBM66 | GH43_26 | GH43_31
pfam Rep_2060_c_91 Rep_2060_c_91_6 9012 9863 - YitT_membrane | DUF2179
TC Rep_2060_c_91 Rep_2060_c_91_7 10116 11903 + 8.A.59.2.1
TF Rep_2060_c_91 Rep_2060_c_91_8 11884 13479 + HTH_AraC | HTH_AraC
STP Rep_2060_c_91 Rep_2060_c_91_9 13667 15043 + SBP_bac_1
CAZyme Rep_2060_c_91 Rep_2060_c_91_10 15223 19980 + CBM32 | CBM32 | CBM32 | GH140
STP Rep_2060_c_91 Rep_2060_c_91_11 20277 21614 + SBP_bac_1
TC Rep_2060_c_91 Rep_2060_c_91_12 21641 22519 + 3.A.1.1.7
TC Rep_2060_c_91 Rep_2060_c_91_13 22521 23348 + 3.A.1.1.47
sulfatase Rep_2060_c_91 Rep_2060_c_91_14 23414 24547 + S1_7
TC Rep_2060_c_91 Rep_2060_c_91_15 24590 25387 - 3.A.1.17.3
TC Rep_2060_c_91 Rep_2060_c_91_16 25380 26147 - 3.A.1.17.13
Gene ID: Rep_2060_c_91_5
Type: CAZyme
Location: 4022 - 8941 (+)
Gene ID: Rep_2060_c_91_6
Type: pfam
Location: 9012 - 9863 (-)
Gene ID: Rep_2060_c_91_7
Type: TC
Location: 10116 - 11903 (+)
Gene ID: Rep_2060_c_91_8
Type: TF
Location: 11884 - 13479 (+)
Gene ID: Rep_2060_c_91_9
Type: STP
Location: 13667 - 15043 (+)
Gene ID: Rep_2060_c_91_10
Type: CAZyme
Location: 15223 - 19980 (+)
Gene ID: Rep_2060_c_91_11
Type: STP
Location: 20277 - 21614 (+)
Gene ID: Rep_2060_c_91_12
Type: TC
Location: 21641 - 22519 (+)
Gene ID: Rep_2060_c_91_13
Type: TC
Location: 22521 - 23348 (+)
Gene ID: Rep_2060_c_91_14
Type: sulfatase
Location: 23414 - 24547 (+)
Gene ID: Rep_2060_c_91_15
Type: TC
Location: 24590 - 25387 (-)
Gene ID: Rep_2060_c_91_16
Type: TC
Location: 25380 - 26147 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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