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Cluster: Rep_2060_CGC105

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_2060_c_89 Rep_2060_c_89_10 9807 11789 - GH20
TF Rep_2060_c_89 Rep_2060_c_89_11 11789 13291 - HTH_AraC
STP Rep_2060_c_89 Rep_2060_c_89_12 13263 15029 - dCache_1
TC Rep_2060_c_89 Rep_2060_c_89_13 15155 15976 - 3.A.1.1.45
TC Rep_2060_c_89 Rep_2060_c_89_14 15976 16866 - 3.A.1.1.42
STP Rep_2060_c_89 Rep_2060_c_89_15 16919 18292 - SBP_bac_1
CAZyme Rep_2060_c_89 Rep_2060_c_89_16 18398 19642 - GH16_3
STP Rep_2060_c_89 Rep_2060_c_89_17 19863 20702 - NUDIX
TC Rep_2060_c_89 Rep_2060_c_89_18 20755 21447 - 2.A.122.1.4
TC Rep_2060_c_89 Rep_2060_c_89_19 21428 21808 - 1.E.14.1.17
Gene ID: Rep_2060_c_89_10
Type: CAZyme
Location: 9807 - 11789 (-)
Gene ID: Rep_2060_c_89_11
Type: TF
Location: 11789 - 13291 (-)
Gene ID: Rep_2060_c_89_12
Type: STP
Location: 13263 - 15029 (-)
Gene ID: Rep_2060_c_89_13
Type: TC
Location: 15155 - 15976 (-)
Gene ID: Rep_2060_c_89_14
Type: TC
Location: 15976 - 16866 (-)
Gene ID: Rep_2060_c_89_15
Type: STP
Location: 16919 - 18292 (-)
Gene ID: Rep_2060_c_89_16
Type: CAZyme
Location: 18398 - 19642 (-)
Gene ID: Rep_2060_c_89_17
Type: STP
Location: 19863 - 20702 (-)
Gene ID: Rep_2060_c_89_18
Type: TC
Location: 20755 - 21447 (-)
Gene ID: Rep_2060_c_89_19
Type: TC
Location: 21428 - 21808 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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