Cluster: Rep_2060_CGC104
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 5
- Substrate:
- Genome ID: Rep_2060
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_2060_c_87 | Rep_2060_c_87_8 | 8947 | 9852 | - | 2.A.115.1.2 |
| CAZyme | Rep_2060_c_87 | Rep_2060_c_87_9 | 9998 | 11344 | - | GH140 |
| CAZyme | Rep_2060_c_87 | Rep_2060_c_87_10 | 11573 | 12388 | + | GH43_18 |
| TF | Rep_2060_c_87 | Rep_2060_c_87_11 | 12408 | 12752 | - | HTH_AraC | HTH_AraC |
| CAZyme | Rep_2060_c_87 | Rep_2060_c_87_12 | 12753 | 13826 | - | GH109 |
| CAZyme | Rep_2060_c_87 | Rep_2060_c_87_13 | 14398 | 23526 | - | GH43_22 | GH43_26 | GH43_27 |
| CAZyme | Rep_2060_c_87 | Rep_2060_c_87_14 | 23546 | 28771 | - | GH43_22 | GH43_34 |
Gene ID: Rep_2060_c_87_8
Type: TC
Location: 8947 - 9852 (-)
Type: TC
Location: 8947 - 9852 (-)
Gene ID: Rep_2060_c_87_9
Type: CAZyme
Location: 9998 - 11344 (-)
Type: CAZyme
Location: 9998 - 11344 (-)
Gene ID: Rep_2060_c_87_10
Type: CAZyme
Location: 11573 - 12388 (+)
Type: CAZyme
Location: 11573 - 12388 (+)
Gene ID: Rep_2060_c_87_11
Type: TF
Location: 12408 - 12752 (-)
Type: TF
Location: 12408 - 12752 (-)
Gene ID: Rep_2060_c_87_12
Type: CAZyme
Location: 12753 - 13826 (-)
Type: CAZyme
Location: 12753 - 13826 (-)
Gene ID: Rep_2060_c_87_13
Type: CAZyme
Location: 14398 - 23526 (-)
Type: CAZyme
Location: 14398 - 23526 (-)
Gene ID: Rep_2060_c_87_14
Type: CAZyme
Location: 23546 - 28771 (-)
Type: CAZyme
Location: 23546 - 28771 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Robinsoniella
Species
Robinsoniella sp900539655
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.