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Cluster: Rep_2060_CGC100

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_2060_c_83 Rep_2060_c_83_1 2 6412 - GH2
pfam Rep_2060_c_83 Rep_2060_c_83_2 6480 7541 - URO-D
STP Rep_2060_c_83 Rep_2060_c_83_3 7569 8705 - Peripla_BP_1
TC Rep_2060_c_83 Rep_2060_c_83_4 8826 9854 - 3.A.1.2.18
TC Rep_2060_c_83 Rep_2060_c_83_5 9851 11356 - 3.A.1.2.2
TF Rep_2060_c_83 Rep_2060_c_83_6 11371 12297 - HTH_AraC
pfam Rep_2060_c_83 Rep_2060_c_83_7 12708 13958 - URO-D
TC Rep_2060_c_83 Rep_2060_c_83_8 13982 14926 - 3.A.1.2.19
TC Rep_2060_c_83 Rep_2060_c_83_9 14970 16493 - 3.A.1.2.20
Gene ID: Rep_2060_c_83_1
Type: CAZyme
Location: 2 - 6412 (-)
Gene ID: Rep_2060_c_83_2
Type: pfam
Location: 6480 - 7541 (-)
Gene ID: Rep_2060_c_83_3
Type: STP
Location: 7569 - 8705 (-)
Gene ID: Rep_2060_c_83_4
Type: TC
Location: 8826 - 9854 (-)
Gene ID: Rep_2060_c_83_5
Type: TC
Location: 9851 - 11356 (-)
Gene ID: Rep_2060_c_83_6
Type: TF
Location: 11371 - 12297 (-)
Gene ID: Rep_2060_c_83_7
Type: pfam
Location: 12708 - 13958 (-)
Gene ID: Rep_2060_c_83_8
Type: TC
Location: 13982 - 14926 (-)
Gene ID: Rep_2060_c_83_9
Type: TC
Location: 14970 - 16493 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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