Cluster: Rep_2060_CGC10
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_2060
- CGC Family ID: CGCFAM_01360
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_2060_c_3 | Rep_2060_c_3_29 | 44547 | 45392 | - | 3.A.1.1.18 |
| TC | Rep_2060_c_3 | Rep_2060_c_3_30 | 45394 | 46317 | - | 3.A.1.1.36 |
| STP | Rep_2060_c_3 | Rep_2060_c_3_31 | 46513 | 47238 | - | SBP_bac_1 |
| pfam | Rep_2060_c_3 | Rep_2060_c_3_32 | 47432 | 47767 | - | SBP_bac_1 |
| CAZyme | Rep_2060_c_3 | Rep_2060_c_3_33 | 48278 | 50977 | + | GH38 |
Gene ID: Rep_2060_c_3_29
Type: TC
Location: 44547 - 45392 (-)
Type: TC
Location: 44547 - 45392 (-)
Gene ID: Rep_2060_c_3_30
Type: TC
Location: 45394 - 46317 (-)
Type: TC
Location: 45394 - 46317 (-)
Gene ID: Rep_2060_c_3_31
Type: STP
Location: 46513 - 47238 (-)
Type: STP
Location: 46513 - 47238 (-)
Gene ID: Rep_2060_c_3_32
Type: pfam
Location: 47432 - 47767 (-)
Type: pfam
Location: 47432 - 47767 (-)
Gene ID: Rep_2060_c_3_33
Type: CAZyme
Location: 48278 - 50977 (+)
Type: CAZyme
Location: 48278 - 50977 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Robinsoniella
Species
Robinsoniella sp900539655
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.