Cluster: Rep_2044_CGC3
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_2044
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_2044_c_0 | Rep_2044_c_0_82 | 83968 | 85209 | + | 2.A.1.13.14 |
| pfam | Rep_2044_c_0 | Rep_2044_c_0_83 | 85235 | 86071 | + | F_bP_aldolase |
| TF | Rep_2044_c_0 | Rep_2044_c_0_84 | 86311 | 87339 | + | LacI |
| CAZyme | Rep_2044_c_0 | Rep_2044_c_0_85 | 87597 | 88601 | + | GH177 |
| pfam | Rep_2044_c_0 | Rep_2044_c_0_86 | 88651 | 89484 | + | AP_endonuc_2 |
| TC | Rep_2044_c_0 | Rep_2044_c_0_87 | 89503 | 90942 | + | 2.A.2.3.3 |
Gene ID: Rep_2044_c_0_82
Type: TC
Location: 83968 - 85209 (+)
Type: TC
Location: 83968 - 85209 (+)
Gene ID: Rep_2044_c_0_83
Type: pfam
Location: 85235 - 86071 (+)
Type: pfam
Location: 85235 - 86071 (+)
Gene ID: Rep_2044_c_0_84
Type: TF
Location: 86311 - 87339 (+)
Type: TF
Location: 86311 - 87339 (+)
Gene ID: Rep_2044_c_0_85
Type: CAZyme
Location: 87597 - 88601 (+)
Type: CAZyme
Location: 87597 - 88601 (+)
Gene ID: Rep_2044_c_0_86
Type: pfam
Location: 88651 - 89484 (+)
Type: pfam
Location: 88651 - 89484 (+)
Gene ID: Rep_2044_c_0_87
Type: TC
Location: 89503 - 90942 (+)
Type: TC
Location: 89503 - 90942 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Anaerostipes
Species
Anaerostipes hominis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_2044_c_0_85 | vegan > omnivore | 6.54078 | 0.00574 |
| Rep_2044_c_0_85 | vegetarian > omnivore | 5.00466 | 0.03201 |
| Rep_2044_c_0_86 | vegan > omnivore | 1.91455 | 0.00574 |