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Cluster: Rep_2044_CGC15

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_2044_c_3 Rep_2044_c_3_62 43852 44190 - 4.A.1.1.15
TF Rep_2044_c_3 Rep_2044_c_3_63 44208 45668 - HTH_Mga
CAZyme Rep_2044_c_3 Rep_2044_c_3_64 45695 47839 - GH3
TC Rep_2044_c_3 Rep_2044_c_3_65 47841 49241 - 4.A.1.2.9
CAZyme Rep_2044_c_3 Rep_2044_c_3_66 49241 50557 - GH32
CAZyme Rep_2044_c_3 Rep_2044_c_3_67 50749 52782 + GH42
NULL(UNKNOWN) Rep_2044_c_3 Rep_2044_c_3_68 53268 53816 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_2044_c_3 Rep_2044_c_3_69 53996 55522 - CBM91 | GH43_12
TC Rep_2044_c_3 Rep_2044_c_3_70 55614 56435 - 4.A.6.1.19
TC Rep_2044_c_3 Rep_2044_c_3_71 56428 57216 - 4.A.6.1.19
TC Rep_2044_c_3 Rep_2044_c_3_72 57346 57840 - 4.A.6.1.19
TC Rep_2044_c_3 Rep_2044_c_3_73 57833 58258 - 4.A.6.1.10
TC Rep_2044_c_3 Rep_2044_c_3_74 58390 61116 - 3.A.23.1.1
Gene ID: Rep_2044_c_3_62
Type: TC
Location: 43852 - 44190 (-)
Gene ID: Rep_2044_c_3_63
Type: TF
Location: 44208 - 45668 (-)
Gene ID: Rep_2044_c_3_64
Type: CAZyme
Location: 45695 - 47839 (-)
Gene ID: Rep_2044_c_3_65
Type: TC
Location: 47841 - 49241 (-)
Gene ID: Rep_2044_c_3_66
Type: CAZyme
Location: 49241 - 50557 (-)
Gene ID: Rep_2044_c_3_67
Type: CAZyme
Location: 50749 - 52782 (+)
Gene ID: Rep_2044_c_3_68
Type:
Location: 53268 - 53816 (+)
Gene ID: Rep_2044_c_3_69
Type: CAZyme
Location: 53996 - 55522 (-)
Gene ID: Rep_2044_c_3_70
Type: TC
Location: 55614 - 56435 (-)
Gene ID: Rep_2044_c_3_71
Type: TC
Location: 56428 - 57216 (-)
Gene ID: Rep_2044_c_3_72
Type: TC
Location: 57346 - 57840 (-)
Gene ID: Rep_2044_c_3_73
Type: TC
Location: 57833 - 58258 (-)
Gene ID: Rep_2044_c_3_74
Type: TC
Location: 58390 - 61116 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_2044_c_3_68 vegan > omnivore 1.89507 0.00574
Rep_2044_c_3_68 vegetarian > omnivore 1.40061 0.03201

🧭 Explore Read Mapping of CGC

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