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Cluster: Rep_202_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_202_c_4 Rep_202_c_4_24 18595 20301 - 8.A.46.1.1
TC Rep_202_c_4 Rep_202_c_4_25 20398 23418 - 1.B.14.6.1
TF Rep_202_c_4 Rep_202_c_4_26 23934 24935 + LacI
TC Rep_202_c_4 Rep_202_c_4_27 24977 26287 + 2.A.2.6.2
CAZyme Rep_202_c_4 Rep_202_c_4_28 26319 28994 + GH77
CAZyme Rep_202_c_4 Rep_202_c_4_29 29143 31278 + GH97
CAZyme Rep_202_c_4 Rep_202_c_4_30 31386 33290 + GH13_14
CAZyme Rep_202_c_4 Rep_202_c_4_31 33338 35263 + GH13_46
CAZyme Rep_202_c_4 Rep_202_c_4_32 35305 37347 + GH13_6
Gene ID: Rep_202_c_4_24
Type: TC
Location: 18595 - 20301 (-)
Gene ID: Rep_202_c_4_25
Type: TC
Location: 20398 - 23418 (-)
Gene ID: Rep_202_c_4_26
Type: TF
Location: 23934 - 24935 (+)
Gene ID: Rep_202_c_4_27
Type: TC
Location: 24977 - 26287 (+)
Gene ID: Rep_202_c_4_28
Type: CAZyme
Location: 26319 - 28994 (+)
Gene ID: Rep_202_c_4_29
Type: CAZyme
Location: 29143 - 31278 (+)
Gene ID: Rep_202_c_4_30
Type: CAZyme
Location: 31386 - 33290 (+)
Gene ID: Rep_202_c_4_31
Type: CAZyme
Location: 33338 - 35263 (+)
Gene ID: Rep_202_c_4_32
Type: CAZyme
Location: 35305 - 37347 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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