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Cluster: Rep_202_CGC20

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_202_c_7 Rep_202_c_7_123 179245 180678 - GH140
CAZyme Rep_202_c_7 Rep_202_c_7_124 180909 182204 - GH95
CAZyme Rep_202_c_7 Rep_202_c_7_125 182215 183402 - GH95
pfam Rep_202_c_7 Rep_202_c_7_126 183672 184943 - Hydrolase | Hydrolase_3 | HAD | ACT_6
pfam Rep_202_c_7 Rep_202_c_7_127 185545 186633 + Porin_O_P | Porin_4
CAZyme Rep_202_c_7 Rep_202_c_7_128 186745 188118 - GH28
CAZyme Rep_202_c_7 Rep_202_c_7_129 188141 189691 - GH28
TC Rep_202_c_7 Rep_202_c_7_130 189910 191046 + 9.B.146.1.4
Gene ID: Rep_202_c_7_123
Type: CAZyme
Location: 179245 - 180678 (-)
Gene ID: Rep_202_c_7_124
Type: CAZyme
Location: 180909 - 182204 (-)
Gene ID: Rep_202_c_7_125
Type: CAZyme
Location: 182215 - 183402 (-)
Gene ID: Rep_202_c_7_126
Type: pfam
Location: 183672 - 184943 (-)
Gene ID: Rep_202_c_7_127
Type: pfam
Location: 185545 - 186633 (+)
Gene ID: Rep_202_c_7_128
Type: CAZyme
Location: 186745 - 188118 (-)
Gene ID: Rep_202_c_7_129
Type: CAZyme
Location: 188141 - 189691 (-)
Gene ID: Rep_202_c_7_130
Type: TC
Location: 189910 - 191046 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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