Cluster: Rep_201_CGC20
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_201
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_201_c_0 | Rep_201_c_0_1919 | 2229420 | 2231024 | - | 2.A.21.3.19 |
| STP | Rep_201_c_0 | Rep_201_c_0_1920 | 2231119 | 2234160 | - | B12-binding | B12-binding_2 |
| CAZyme | Rep_201_c_0 | Rep_201_c_0_1921 | 2234260 | 2236512 | - | GH31_3 |
| CAZyme | Rep_201_c_0 | Rep_201_c_0_1922 | 2236520 | 2238415 | - | GH141 |
| TF | Rep_201_c_0 | Rep_201_c_0_1923 | 2238441 | 2239385 | - | HTH_AraC |
| pfam | Rep_201_c_0 | Rep_201_c_0_1924 | 2239621 | 2240319 | + | Met_synt_B12 |
| TC | Rep_201_c_0 | Rep_201_c_0_1925 | 2240650 | 2242347 | - | 3.A.1.120.6 |
| TC | Rep_201_c_0 | Rep_201_c_0_1926 | 2244135 | 2244890 | - | 3.D.10.1.5 |
| pfam | Rep_201_c_0 | Rep_201_c_0_1927 | 2244952 | 2245263 | - | 23S_rRNA_IVP |
| TC | Rep_201_c_0 | Rep_201_c_0_1928 | 2245428 | 2247410 | - | 3.D.10.1.5 |
| NULL(UNKNOWN) | Rep_201_c_0 | Rep_201_c_0_1929 | 2247444 | 2248121 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_201_c_0 | Rep_201_c_0_1930 | 2248377 | 2250248 | + | 1.C.39.4.5 |
Gene ID: Rep_201_c_0_1919
Type: TC
Location: 2229420 - 2231024 (-)
Type: TC
Location: 2229420 - 2231024 (-)
Gene ID: Rep_201_c_0_1920
Type: STP
Location: 2231119 - 2234160 (-)
Type: STP
Location: 2231119 - 2234160 (-)
Gene ID: Rep_201_c_0_1921
Type: CAZyme
Location: 2234260 - 2236512 (-)
Type: CAZyme
Location: 2234260 - 2236512 (-)
Gene ID: Rep_201_c_0_1922
Type: CAZyme
Location: 2236520 - 2238415 (-)
Type: CAZyme
Location: 2236520 - 2238415 (-)
Gene ID: Rep_201_c_0_1923
Type: TF
Location: 2238441 - 2239385 (-)
Type: TF
Location: 2238441 - 2239385 (-)
Gene ID: Rep_201_c_0_1924
Type: pfam
Location: 2239621 - 2240319 (+)
Type: pfam
Location: 2239621 - 2240319 (+)
Gene ID: Rep_201_c_0_1925
Type: TC
Location: 2240650 - 2242347 (-)
Type: TC
Location: 2240650 - 2242347 (-)
Gene ID: Rep_201_c_0_1926
Type: TC
Location: 2244135 - 2244890 (-)
Type: TC
Location: 2244135 - 2244890 (-)
Gene ID: Rep_201_c_0_1927
Type: pfam
Location: 2244952 - 2245263 (-)
Type: pfam
Location: 2244952 - 2245263 (-)
Gene ID: Rep_201_c_0_1928
Type: TC
Location: 2245428 - 2247410 (-)
Type: TC
Location: 2245428 - 2247410 (-)
Gene ID: Rep_201_c_0_1929
Type:
Location: 2247444 - 2248121 (-)
Type:
Location: 2247444 - 2248121 (-)
Gene ID: Rep_201_c_0_1930
Type: TC
Location: 2248377 - 2250248 (+)
Type: TC
Location: 2248377 - 2250248 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Species
Prevotella sp900548745
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.