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Cluster: Rep_201_CGC16

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_201_c_0 Rep_201_c_0_1541 1767796 1768998 - CE15
TC Rep_201_c_0 Rep_201_c_0_1542 1769102 1770697 - 8.A.46.1.3
TC Rep_201_c_0 Rep_201_c_0_1543 1770741 1772858 - 1.B.14.6.1
TC Rep_201_c_0 Rep_201_c_0_1544 1772970 1773839 - 1.B.14.6.1
CAZyme Rep_201_c_0 Rep_201_c_0_1545 1774174 1778559 + GH139 | GH2
pfam Rep_201_c_0 Rep_201_c_0_1546 1778642 1780087 - RVT_1 | GIIM
TC Rep_201_c_0 Rep_201_c_0_1547 1781375 1783579 + 3.A.10.1.11
Gene ID: Rep_201_c_0_1541
Type: CAZyme
Location: 1767796 - 1768998 (-)
Gene ID: Rep_201_c_0_1542
Type: TC
Location: 1769102 - 1770697 (-)
Gene ID: Rep_201_c_0_1543
Type: TC
Location: 1770741 - 1772858 (-)
Gene ID: Rep_201_c_0_1544
Type: TC
Location: 1772970 - 1773839 (-)
Gene ID: Rep_201_c_0_1545
Type: CAZyme
Location: 1774174 - 1778559 (+)
Gene ID: Rep_201_c_0_1546
Type: pfam
Location: 1778642 - 1780087 (-)
Gene ID: Rep_201_c_0_1547
Type: TC
Location: 1781375 - 1783579 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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