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Cluster: Rep_2000_CGC6

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_2000_c_1 Rep_2000_c_1_2138 2163723 2167187 - 3.B.1.1.1
STP Rep_2000_c_1 Rep_2000_c_1_2139 2167375 2168760 - AAA
NULL(UNKNOWN) Rep_2000_c_1 Rep_2000_c_1_2140 2168842 2169255 - NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_2000_c_1 Rep_2000_c_1_2141 2169440 2171884 - 3.A.9.1.2
pfam Rep_2000_c_1 Rep_2000_c_1_2142 2172042 2172713 - PseudoU_synth_2
CAZyme Rep_2000_c_1 Rep_2000_c_1_2143 2172745 2174781 - GH13_39
NULL(UNKNOWN) Rep_2000_c_1 Rep_2000_c_1_2144 2175114 2175647 - NULL(UNKNOWN)
[View Structural Homologs]
pfam Rep_2000_c_1 Rep_2000_c_1_2145 2175738 2176961 - PFK
TC Rep_2000_c_1 Rep_2000_c_1_2146 2177124 2178461 - 2.A.40.7.6
Gene ID: Rep_2000_c_1_2138
Type: TC
Location: 2163723 - 2167187 (-)
Gene ID: Rep_2000_c_1_2139
Type: STP
Location: 2167375 - 2168760 (-)
Gene ID: Rep_2000_c_1_2140
Type:
Location: 2168842 - 2169255 (-)
Gene ID: Rep_2000_c_1_2141
Type: TC
Location: 2169440 - 2171884 (-)
Gene ID: Rep_2000_c_1_2142
Type: pfam
Location: 2172042 - 2172713 (-)
Gene ID: Rep_2000_c_1_2143
Type: CAZyme
Location: 2172745 - 2174781 (-)
Gene ID: Rep_2000_c_1_2144
Type:
Location: 2175114 - 2175647 (-)
Gene ID: Rep_2000_c_1_2145
Type: pfam
Location: 2175738 - 2176961 (-)
Gene ID: Rep_2000_c_1_2146
Type: TC
Location: 2177124 - 2178461 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_2000_c_1_2142 vegan > omnivore 1.15597 0.01786
Rep_2000_c_1_2144 vegan > omnivore 1.69496 0.01786
Rep_2000_c_1_2145 vegan > omnivore 1.67761 0.01786

🧭 Explore Read Mapping of CGC

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