Cluster: Rep_2000_CGC5
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 3
- Substrate:
- Genome ID: Rep_2000
- CGC Family ID: CGCFAM_00904
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_2000_c_1 | Rep_2000_c_1_1328 | 1329369 | 1332524 | + | 2.A.66.4.5 |
| CAZyme | Rep_2000_c_1 | Rep_2000_c_1_1329 | 1332521 | 1333633 | + | GT4 |
| pfam | Rep_2000_c_1 | Rep_2000_c_1_1330 | 1333630 | 1334118 | + | DUF4330 |
| pfam | Rep_2000_c_1 | Rep_2000_c_1_1331 | 1334120 | 1334596 | + | DUF4330 |
| CAZyme | Rep_2000_c_1 | Rep_2000_c_1_1332 | 1334611 | 1336077 | + | GT4 |
| pfam | Rep_2000_c_1 | Rep_2000_c_1_1333 | 1336077 | 1336853 | + | PS_pyruv_trans |
| CAZyme | Rep_2000_c_1 | Rep_2000_c_1_1334 | 1336868 | 1337596 | + | GT26 |
| pfam | Rep_2000_c_1 | Rep_2000_c_1_1335 | 1338149 | 1339240 | + | HTH_30 | GGDEF_2 |
| TC | Rep_2000_c_1 | Rep_2000_c_1_1336 | 1339457 | 1340143 | + | 3.A.1.140.1 |
| pfam | Rep_2000_c_1 | Rep_2000_c_1_1337 | 1340133 | 1341032 | + | FtsX | FtsX_ECD |
| peptidase | Rep_2000_c_1 | Rep_2000_c_1_1338 | 1341161 | 1342351 | + | S41.UPA |
| TC | Rep_2000_c_1 | Rep_2000_c_1_1339 | 1342493 | 1343560 | + | 9.B.157.1.2 |
Gene ID: Rep_2000_c_1_1328
Type: TC
Location: 1329369 - 1332524 (+)
Type: TC
Location: 1329369 - 1332524 (+)
Gene ID: Rep_2000_c_1_1329
Type: CAZyme
Location: 1332521 - 1333633 (+)
Type: CAZyme
Location: 1332521 - 1333633 (+)
Gene ID: Rep_2000_c_1_1330
Type: pfam
Location: 1333630 - 1334118 (+)
Type: pfam
Location: 1333630 - 1334118 (+)
Gene ID: Rep_2000_c_1_1331
Type: pfam
Location: 1334120 - 1334596 (+)
Type: pfam
Location: 1334120 - 1334596 (+)
Gene ID: Rep_2000_c_1_1332
Type: CAZyme
Location: 1334611 - 1336077 (+)
Type: CAZyme
Location: 1334611 - 1336077 (+)
Gene ID: Rep_2000_c_1_1333
Type: pfam
Location: 1336077 - 1336853 (+)
Type: pfam
Location: 1336077 - 1336853 (+)
Gene ID: Rep_2000_c_1_1334
Type: CAZyme
Location: 1336868 - 1337596 (+)
Type: CAZyme
Location: 1336868 - 1337596 (+)
Gene ID: Rep_2000_c_1_1335
Type: pfam
Location: 1338149 - 1339240 (+)
Type: pfam
Location: 1338149 - 1339240 (+)
Gene ID: Rep_2000_c_1_1336
Type: TC
Location: 1339457 - 1340143 (+)
Type: TC
Location: 1339457 - 1340143 (+)
Gene ID: Rep_2000_c_1_1337
Type: pfam
Location: 1340133 - 1341032 (+)
Type: pfam
Location: 1340133 - 1341032 (+)
Gene ID: Rep_2000_c_1_1338
Type: peptidase
Location: 1341161 - 1342351 (+)
Type: peptidase
Location: 1341161 - 1342351 (+)
Gene ID: Rep_2000_c_1_1339
Type: TC
Location: 1342493 - 1343560 (+)
Type: TC
Location: 1342493 - 1343560 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Anaerotignaceae
Genus
Anaerotignum
Species
Anaerotignum faecicola
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_2000_c_1_1331 | vegan > omnivore | 1.39471 | 0.01786 |