Cluster: Rep_2000_CGC2
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_2000
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_2000_c_1 | Rep_2000_c_1_655 | 654354 | 655769 | + | CE4 |
| TC | Rep_2000_c_1 | Rep_2000_c_1_656 | 655828 | 657186 | - | 2.A.66.1.22 |
| TF | Rep_2000_c_1 | Rep_2000_c_1_657 | 657319 | 658029 | - | 0045030 |
| TC | Rep_2000_c_1 | Rep_2000_c_1_658 | 658223 | 660142 | + | 3.A.1.121.4 |
| pfam | Rep_2000_c_1 | Rep_2000_c_1_659 | 660342 | 660851 | - | ECF-ribofla_trS | ECF_trnsprt |
| NULL(UNKNOWN) | Rep_2000_c_1 | Rep_2000_c_1_660 | 661194 | 661775 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_2000_c_1 | Rep_2000_c_1_661 | 662084 | 662800 | + | 3.A.1.25.6 |
Gene ID: Rep_2000_c_1_655
Type: CAZyme
Location: 654354 - 655769 (+)
Type: CAZyme
Location: 654354 - 655769 (+)
Gene ID: Rep_2000_c_1_656
Type: TC
Location: 655828 - 657186 (-)
Type: TC
Location: 655828 - 657186 (-)
Gene ID: Rep_2000_c_1_657
Type: TF
Location: 657319 - 658029 (-)
Type: TF
Location: 657319 - 658029 (-)
Gene ID: Rep_2000_c_1_658
Type: TC
Location: 658223 - 660142 (+)
Type: TC
Location: 658223 - 660142 (+)
Gene ID: Rep_2000_c_1_659
Type: pfam
Location: 660342 - 660851 (-)
Type: pfam
Location: 660342 - 660851 (-)
Gene ID: Rep_2000_c_1_660
Type:
Location: 661194 - 661775 (-)
Type:
Location: 661194 - 661775 (-)
Gene ID: Rep_2000_c_1_661
Type: TC
Location: 662084 - 662800 (+)
Type: TC
Location: 662084 - 662800 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Anaerotignaceae
Genus
Anaerotignum
Species
Anaerotignum faecicola
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_2000_c_1_655 | vegan > omnivore | 1.23843 | 0.01786 |
| Rep_2000_c_1_659 | vegan > omnivore | 1.23672 | 0.01786 |
| Rep_2000_c_1_660 | vegan > omnivore | 1.11078 | 0.01786 |
| Rep_2000_c_1_661 | vegetarian > vegan | 1.24225 | 0.03591 |