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Cluster: Rep_2000_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_2000_c_1 Rep_2000_c_1_161 178782 180086 + GT4
TC Rep_2000_c_1 Rep_2000_c_1_162 180622 182016 - 2.A.25.1.9
TC Rep_2000_c_1 Rep_2000_c_1_163 182720 184114 - 2.A.25.1.9
STP Rep_2000_c_1 Rep_2000_c_1_164 184676 185077 - Nitro_FeMo-Co
TC Rep_2000_c_1 Rep_2000_c_1_165 185100 185927 - 3.A.1.132.3
STP Rep_2000_c_1 Rep_2000_c_1_166 185920 186312 - Sigma70_r4_2
TC Rep_2000_c_1 Rep_2000_c_1_167 186446 187807 - 2.A.3.8.12
Gene ID: Rep_2000_c_1_161
Type: CAZyme
Location: 178782 - 180086 (+)
Gene ID: Rep_2000_c_1_162
Type: TC
Location: 180622 - 182016 (-)
Gene ID: Rep_2000_c_1_163
Type: TC
Location: 182720 - 184114 (-)
Gene ID: Rep_2000_c_1_164
Type: STP
Location: 184676 - 185077 (-)
Gene ID: Rep_2000_c_1_165
Type: TC
Location: 185100 - 185927 (-)
Gene ID: Rep_2000_c_1_166
Type: STP
Location: 185920 - 186312 (-)
Gene ID: Rep_2000_c_1_167
Type: TC
Location: 186446 - 187807 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_2000_c_1_161 vegan > omnivore 1.74594 0.01786
Rep_2000_c_1_163 vegan > omnivore 1.54094 0.01786
Rep_2000_c_1_163 vegetarian > omnivore 1.74068 0.01465

🧭 Explore Read Mapping of CGC

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