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Cluster: Rep_1994_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_1994_c_0 Rep_1994_c_0_237 251134 252852 - 4.C.1.1.14
pfam Rep_1994_c_0 Rep_1994_c_0_238 252924 254723 - Radical_SAM | Radical_SAM_N | DUF3362
TC Rep_1994_c_0 Rep_1994_c_0_239 254794 255804 - 3.A.1.2.17
TC Rep_1994_c_0 Rep_1994_c_0_240 255804 257012 - 3.A.1.2.17
TC Rep_1994_c_0 Rep_1994_c_0_241 257016 258551 - 3.A.1.2.12
TC Rep_1994_c_0 Rep_1994_c_0_242 258647 259768 - 3.A.1.2.12
pfam Rep_1994_c_0 Rep_1994_c_0_243 259944 260423 - CAP
NULL(UNKNOWN) Rep_1994_c_0 Rep_1994_c_0_244 260618 260728 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_1994_c_0 Rep_1994_c_0_245 260736 261395 - GH23
Gene ID: Rep_1994_c_0_237
Type: TC
Location: 251134 - 252852 (-)
Gene ID: Rep_1994_c_0_238
Type: pfam
Location: 252924 - 254723 (-)
Gene ID: Rep_1994_c_0_239
Type: TC
Location: 254794 - 255804 (-)
Gene ID: Rep_1994_c_0_240
Type: TC
Location: 255804 - 257012 (-)
Gene ID: Rep_1994_c_0_241
Type: TC
Location: 257016 - 258551 (-)
Gene ID: Rep_1994_c_0_242
Type: TC
Location: 258647 - 259768 (-)
Gene ID: Rep_1994_c_0_243
Type: pfam
Location: 259944 - 260423 (-)
Gene ID: Rep_1994_c_0_244
Type:
Location: 260618 - 260728 (-)
Gene ID: Rep_1994_c_0_245
Type: CAZyme
Location: 260736 - 261395 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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