dbCAN HGM

Cluster: Rep_1984_CGC9

Gene Type	Contig ID	Protein ID	Start	Stop	Direction	Protein Family
TC	Rep_1984_c_33	Rep_1984_c_33_18	16774	18285	-	2.A.3.2.3
TF	Rep_1984_c_33	Rep_1984_c_33_19	18581	18958	+	GntR
TC	Rep_1984_c_33	Rep_1984_c_33_20	19103	19861	+	3.A.1.132.6
NULL(UNKNOWN)	Rep_1984_c_33	Rep_1984_c_33_21	19885	21318	+	NULL(UNKNOWN) [View Structural Homologs]
TC	Rep_1984_c_33	Rep_1984_c_33_22	21336	23366	-	3.A.23.1.1
pfam	Rep_1984_c_33	Rep_1984_c_33_23	23512	24114	+	Flavodoxin_2 \| FMN_red
sulfatase	Rep_1984_c_33	Rep_1984_c_33_24	24124	24837	+	S1_2
TC	Rep_1984_c_33	Rep_1984_c_33_25	25016	26449	+	2.A.35.1.1
CAZyme	Rep_1984_c_33	Rep_1984_c_33_26	26463	27305	+	CE4

Gene ID: Rep_1984_c_33_18
Type: TC
Location: 16774 - 18285 (-)

Gene ID: Rep_1984_c_33_19
Type: TF
Location: 18581 - 18958 (+)

Gene ID: Rep_1984_c_33_20
Type: TC
Location: 19103 - 19861 (+)

Gene ID: Rep_1984_c_33_21
Type:
Location: 19885 - 21318 (+)

Gene ID: Rep_1984_c_33_22
Type: TC
Location: 21336 - 23366 (-)

Gene ID: Rep_1984_c_33_23
Type: pfam
Location: 23512 - 24114 (+)

Gene ID: Rep_1984_c_33_24
Type: sulfatase
Location: 24124 - 24837 (+)

Gene ID: Rep_1984_c_33_25
Type: TC
Location: 25016 - 26449 (+)

Gene ID: Rep_1984_c_33_26
Type: CAZyme
Location: 26463 - 27305 (+)

Taxonomic Lineage

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Gene Level Read Mapping

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Gene ID	Condition Pair	log2FC	FDR P-value
Rep_1984_c_33_18	vegetarian > omnivore	1.57801	0.00821
Rep_1984_c_33_18	vegetarian > vegan	2.39876	0.00573
Rep_1984_c_33_20	vegetarian > omnivore	1.96568	0.00821
Rep_1984_c_33_20	vegetarian > vegan	2.20974	0.00573
Rep_1984_c_33_21	vegetarian > omnivore	2.09889	0.00821
Rep_1984_c_33_21	vegetarian > vegan	2.64673	0.00573
Rep_1984_c_33_22	vegetarian > vegan	2.27884	0.00573