Cluster: Rep_1984_CGC5
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_1984
- CGC Family ID: CGCFAM_08418
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_1984_c_4 | Rep_1984_c_4_61 | 70155 | 71591 | - | 3.A.1.31.2 |
| TC | Rep_1984_c_4 | Rep_1984_c_4_62 | 71540 | 72238 | - | 3.A.1.31.2 |
| pfam | Rep_1984_c_4 | Rep_1984_c_4_63 | 72235 | 72837 | - | Trep_Strep |
| TC | Rep_1984_c_4 | Rep_1984_c_4_64 | 72909 | 74651 | - | 3.A.1.21.1 |
| TC | Rep_1984_c_4 | Rep_1984_c_4_65 | 74648 | 76441 | - | 3.A.1.21.1 |
| pfam | Rep_1984_c_4 | Rep_1984_c_4_66 | 76816 | 77532 | - | zf-HC2 |
| STP | Rep_1984_c_4 | Rep_1984_c_4_67 | 77522 | 78013 | - | Sigma70_r2 | Sigma70_r4_2 |
| TC | Rep_1984_c_4 | Rep_1984_c_4_68 | 78120 | 79169 | - | 4.D.2.1.5 |
| CAZyme | Rep_1984_c_4 | Rep_1984_c_4_69 | 79166 | 79879 | - | CE4 |
| CAZyme | Rep_1984_c_4 | Rep_1984_c_4_70 | 79866 | 80999 | - | GT28 |
Gene ID: Rep_1984_c_4_61
Type: TC
Location: 70155 - 71591 (-)
Type: TC
Location: 70155 - 71591 (-)
Gene ID: Rep_1984_c_4_62
Type: TC
Location: 71540 - 72238 (-)
Type: TC
Location: 71540 - 72238 (-)
Gene ID: Rep_1984_c_4_63
Type: pfam
Location: 72235 - 72837 (-)
Type: pfam
Location: 72235 - 72837 (-)
Gene ID: Rep_1984_c_4_64
Type: TC
Location: 72909 - 74651 (-)
Type: TC
Location: 72909 - 74651 (-)
Gene ID: Rep_1984_c_4_65
Type: TC
Location: 74648 - 76441 (-)
Type: TC
Location: 74648 - 76441 (-)
Gene ID: Rep_1984_c_4_66
Type: pfam
Location: 76816 - 77532 (-)
Type: pfam
Location: 76816 - 77532 (-)
Gene ID: Rep_1984_c_4_67
Type: STP
Location: 77522 - 78013 (-)
Type: STP
Location: 77522 - 78013 (-)
Gene ID: Rep_1984_c_4_68
Type: TC
Location: 78120 - 79169 (-)
Type: TC
Location: 78120 - 79169 (-)
Gene ID: Rep_1984_c_4_69
Type: CAZyme
Location: 79166 - 79879 (-)
Type: CAZyme
Location: 79166 - 79879 (-)
Gene ID: Rep_1984_c_4_70
Type: CAZyme
Location: 79866 - 80999 (-)
Type: CAZyme
Location: 79866 - 80999 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Peptostreptococcales
Family
Anaerovoracaceae
Genus
CAG-238
Species
CAG-238 sp900551415
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_1984_c_4_62 | vegan > omnivore | 1.22127 | 0.00953 |
| Rep_1984_c_4_66 | vegetarian > vegan | 1.97555 | 0.00573 |
| Rep_1984_c_4_67 | vegetarian > omnivore | 1.05564 | 0.00821 |
| Rep_1984_c_4_67 | vegetarian > vegan | 1.16455 | 0.00573 |
| Rep_1984_c_4_68 | vegetarian > omnivore | 1.23897 | 0.00821 |
| Rep_1984_c_4_68 | vegetarian > vegan | 1.34984 | 0.00573 |
| Rep_1984_c_4_69 | vegetarian > omnivore | 1.54049 | 0.00821 |
| Rep_1984_c_4_69 | vegetarian > vegan | 1.21858 | 0.00573 |
| Rep_1984_c_4_70 | vegetarian > vegan | 1.06649 | 0.00573 |