Cluster: Rep_1984_CGC4
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_1984
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_1984_c_3 | Rep_1984_c_3_91 | 70552 | 71430 | + | GH23 |
| STP | Rep_1984_c_3 | Rep_1984_c_3_92 | 71465 | 72022 | + | NUDIX |
| NULL(UNKNOWN) | Rep_1984_c_3 | Rep_1984_c_3_93 | 71985 | 72566 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_1984_c_3 | Rep_1984_c_3_94 | 72673 | 74736 | - | 3.A.23.1.1 |
| TC | Rep_1984_c_3 | Rep_1984_c_3_95 | 74990 | 76390 | + | 2.A.35.1.2 |
| peptidase | Rep_1984_c_3 | Rep_1984_c_3_96 | 76437 | 77573 | + | M20.UPW |
| pfam | Rep_1984_c_3 | Rep_1984_c_3_97 | 77834 | 78382 | + | Chromate_transp |
| TC | Rep_1984_c_3 | Rep_1984_c_3_98 | 78379 | 78963 | + | 2.A.51.1.6 |
Gene ID: Rep_1984_c_3_91
Type: CAZyme
Location: 70552 - 71430 (+)
Type: CAZyme
Location: 70552 - 71430 (+)
Gene ID: Rep_1984_c_3_92
Type: STP
Location: 71465 - 72022 (+)
Type: STP
Location: 71465 - 72022 (+)
Gene ID: Rep_1984_c_3_93
Type:
Location: 71985 - 72566 (-)
Type:
Location: 71985 - 72566 (-)
Gene ID: Rep_1984_c_3_94
Type: TC
Location: 72673 - 74736 (-)
Type: TC
Location: 72673 - 74736 (-)
Gene ID: Rep_1984_c_3_95
Type: TC
Location: 74990 - 76390 (+)
Type: TC
Location: 74990 - 76390 (+)
Gene ID: Rep_1984_c_3_96
Type: peptidase
Location: 76437 - 77573 (+)
Type: peptidase
Location: 76437 - 77573 (+)
Gene ID: Rep_1984_c_3_97
Type: pfam
Location: 77834 - 78382 (+)
Type: pfam
Location: 77834 - 78382 (+)
Gene ID: Rep_1984_c_3_98
Type: TC
Location: 78379 - 78963 (+)
Type: TC
Location: 78379 - 78963 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Peptostreptococcales
Family
Anaerovoracaceae
Genus
CAG-238
Species
CAG-238 sp900551415
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_1984_c_3_91 | vegetarian > omnivore | 1.62435 | 0.00821 |
| Rep_1984_c_3_91 | vegetarian > vegan | 1.98722 | 0.00573 |
| Rep_1984_c_3_92 | vegetarian > omnivore | 1.82797 | 0.00821 |
| Rep_1984_c_3_92 | vegetarian > vegan | 1.20828 | 0.00573 |
| Rep_1984_c_3_93 | vegetarian > omnivore | 1.87923 | 0.00821 |
| Rep_1984_c_3_97 | vegetarian > omnivore | 1.49412 | 0.00821 |
| Rep_1984_c_3_97 | vegetarian > vegan | 2.39300 | 0.00573 |
| Rep_1984_c_3_98 | vegetarian > omnivore | 1.62309 | 0.00821 |
| Rep_1984_c_3_98 | vegetarian > vegan | 1.58746 | 0.00573 |