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Cluster: Rep_1979_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_1979_c_11 Rep_1979_c_11_4 2421 5417 - GT51
TC Rep_1979_c_11 Rep_1979_c_11_5 5705 7915 + 3.A.11.1.1
pfam Rep_1979_c_11 Rep_1979_c_11_6 7897 8943 + DNA_pol3_delta | DNA_pol3_delta_C
TC Rep_1979_c_11 Rep_1979_c_11_7 9081 10016 + 2.A.7.3.47
TC Rep_1979_c_11 Rep_1979_c_11_8 10328 10837 + 3.D.1.5.1
TC Rep_1979_c_11 Rep_1979_c_11_9 10850 12598 + 3.D.1.5.1
STP Rep_1979_c_11 Rep_1979_c_11_10 12615 16124 + Fer4 | Fer4 | Pyr_redox_2
TC Rep_1979_c_11 Rep_1979_c_11_11 17254 19110 + 3.D.1.5.1
Gene ID: Rep_1979_c_11_4
Type: CAZyme
Location: 2421 - 5417 (-)
Gene ID: Rep_1979_c_11_5
Type: TC
Location: 5705 - 7915 (+)
Gene ID: Rep_1979_c_11_6
Type: pfam
Location: 7897 - 8943 (+)
Gene ID: Rep_1979_c_11_7
Type: TC
Location: 9081 - 10016 (+)
Gene ID: Rep_1979_c_11_8
Type: TC
Location: 10328 - 10837 (+)
Gene ID: Rep_1979_c_11_9
Type: TC
Location: 10850 - 12598 (+)
Gene ID: Rep_1979_c_11_10
Type: STP
Location: 12615 - 16124 (+)
Gene ID: Rep_1979_c_11_11
Type: TC
Location: 17254 - 19110 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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