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Cluster: Rep_1974_CGC5

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_1974_c_3 Rep_1974_c_3_22 24830 25285 + 3.A.11.1.4
TC Rep_1974_c_3 Rep_1974_c_3_23 25297 26586 + 9.B.146.1.4
pfam Rep_1974_c_3 Rep_1974_c_3_24 26602 27717 + Epimerase_2
pfam Rep_1974_c_3 Rep_1974_c_3_25 27714 28142 + MatE
TC Rep_1974_c_3 Rep_1974_c_3_26 28157 29101 + 2.A.66.1.28
NULL(UNKNOWN) Rep_1974_c_3 Rep_1974_c_3_27 29315 29626 + NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_1974_c_3 Rep_1974_c_3_28 29630 30298 + 3.A.2.1.6
pfam Rep_1974_c_3 Rep_1974_c_3_29 30431 30655 + ATP-synt_C
pfam Rep_1974_c_3 Rep_1974_c_3_30 30704 31210 + ATP-synt_B
TC Rep_1974_c_3 Rep_1974_c_3_31 31198 31731 + 3.A.2.1.5
TC Rep_1974_c_3 Rep_1974_c_3_32 31747 33267 + 3.A.2.1.5
TC Rep_1974_c_3 Rep_1974_c_3_33 33317 34216 + 3.A.2.1.1
TC Rep_1974_c_3 Rep_1974_c_3_34 34216 35631 + 3.A.2.1.5
pfam Rep_1974_c_3 Rep_1974_c_3_35 35624 36064 + ATP-synt_DE_N
TC Rep_1974_c_3 Rep_1974_c_3_36 36325 37767 + 2.A.114.1.4
pfam Rep_1974_c_3 Rep_1974_c_3_37 37862 38299 + Acetyltransf_1 | Acetyltransf_7 | Acetyltransf_10
CAZyme Rep_1974_c_3 Rep_1974_c_3_38 38485 39597 + GH23
Gene ID: Rep_1974_c_3_22
Type: TC
Location: 24830 - 25285 (+)
Gene ID: Rep_1974_c_3_23
Type: TC
Location: 25297 - 26586 (+)
Gene ID: Rep_1974_c_3_24
Type: pfam
Location: 26602 - 27717 (+)
Gene ID: Rep_1974_c_3_25
Type: pfam
Location: 27714 - 28142 (+)
Gene ID: Rep_1974_c_3_26
Type: TC
Location: 28157 - 29101 (+)
Gene ID: Rep_1974_c_3_27
Type:
Location: 29315 - 29626 (+)
Gene ID: Rep_1974_c_3_28
Type: TC
Location: 29630 - 30298 (+)
Gene ID: Rep_1974_c_3_29
Type: pfam
Location: 30431 - 30655 (+)
Gene ID: Rep_1974_c_3_30
Type: pfam
Location: 30704 - 31210 (+)
Gene ID: Rep_1974_c_3_31
Type: TC
Location: 31198 - 31731 (+)
Gene ID: Rep_1974_c_3_32
Type: TC
Location: 31747 - 33267 (+)
Gene ID: Rep_1974_c_3_33
Type: TC
Location: 33317 - 34216 (+)
Gene ID: Rep_1974_c_3_34
Type: TC
Location: 34216 - 35631 (+)
Gene ID: Rep_1974_c_3_35
Type: pfam
Location: 35624 - 36064 (+)
Gene ID: Rep_1974_c_3_36
Type: TC
Location: 36325 - 37767 (+)
Gene ID: Rep_1974_c_3_37
Type: pfam
Location: 37862 - 38299 (+)
Gene ID: Rep_1974_c_3_38
Type: CAZyme
Location: 38485 - 39597 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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