dbCAN Logo

Cluster: Rep_1971_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_1971_c_10 Rep_1971_c_10_6 9346 10749 + 1.A.26.1.2
pfam Rep_1971_c_10 Rep_1971_c_10_7 10775 11608 + Transketolase_N | DXP_synthase_N
pfam Rep_1971_c_10 Rep_1971_c_10_8 11601 12548 + Transket_pyr | Transketolase_C | Transketolase_C_1
TC Rep_1971_c_10 Rep_1971_c_10_9 12567 14447 + 9.B.18.2.1
pfam Rep_1971_c_10 Rep_1971_c_10_10 14615 15829 + Aminotran_1_2 | DegT_DnrJ_EryC1
TC Rep_1971_c_10 Rep_1971_c_10_11 15826 16512 + 9.B.18.1.3
CAZyme Rep_1971_c_10 Rep_1971_c_10_12 16527 17780 + GT4
Gene ID: Rep_1971_c_10_6
Type: TC
Location: 9346 - 10749 (+)
Gene ID: Rep_1971_c_10_7
Type: pfam
Location: 10775 - 11608 (+)
Gene ID: Rep_1971_c_10_8
Type: pfam
Location: 11601 - 12548 (+)
Gene ID: Rep_1971_c_10_9
Type: TC
Location: 12567 - 14447 (+)
Gene ID: Rep_1971_c_10_10
Type: pfam
Location: 14615 - 15829 (+)
Gene ID: Rep_1971_c_10_11
Type: TC
Location: 15826 - 16512 (+)
Gene ID: Rep_1971_c_10_12
Type: CAZyme
Location: 16527 - 17780 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

← Back to Cluster List