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Cluster: Rep_1967_CGC5

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_1967_c_10 Rep_1967_c_10_15 15358 17268 + 9.B.106.2.2
pfam Rep_1967_c_10 Rep_1967_c_10_16 17326 18213 + MMR_HSR1 | RsgA_GTPase | RsgA_N
pfam Rep_1967_c_10 Rep_1967_c_10_17 18227 18889 + Ribul_P_3_epim
CAZyme Rep_1967_c_10 Rep_1967_c_10_18 19094 22048 - GT51
TC Rep_1967_c_10 Rep_1967_c_10_19 22336 24648 + 3.A.11.1.1
TF Rep_1967_c_10 Rep_1967_c_10_20 24811 25542 + HTH_DeoR
STP Rep_1967_c_10 Rep_1967_c_10_21 25542 26471 + PfkB
TC Rep_1967_c_10 Rep_1967_c_10_22 26468 28471 + 4.A.2.1.7
pfam Rep_1967_c_10 Rep_1967_c_10_23 28762 29310 + PMSR
STP Rep_1967_c_10 Rep_1967_c_10_24 29431 29688 + PTS-HPr
TC Rep_1967_c_10 Rep_1967_c_10_25 29978 30991 + 2.A.7.3.12
Gene ID: Rep_1967_c_10_15
Type: TC
Location: 15358 - 17268 (+)
Gene ID: Rep_1967_c_10_16
Type: pfam
Location: 17326 - 18213 (+)
Gene ID: Rep_1967_c_10_17
Type: pfam
Location: 18227 - 18889 (+)
Gene ID: Rep_1967_c_10_18
Type: CAZyme
Location: 19094 - 22048 (-)
Gene ID: Rep_1967_c_10_19
Type: TC
Location: 22336 - 24648 (+)
Gene ID: Rep_1967_c_10_20
Type: TF
Location: 24811 - 25542 (+)
Gene ID: Rep_1967_c_10_21
Type: STP
Location: 25542 - 26471 (+)
Gene ID: Rep_1967_c_10_22
Type: TC
Location: 26468 - 28471 (+)
Gene ID: Rep_1967_c_10_23
Type: pfam
Location: 28762 - 29310 (+)
Gene ID: Rep_1967_c_10_24
Type: STP
Location: 29431 - 29688 (+)
Gene ID: Rep_1967_c_10_25
Type: TC
Location: 29978 - 30991 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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