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Cluster: Rep_1967_CGC11

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_1967_c_20 Rep_1967_c_20_10 12450 14159 - GT2
TC Rep_1967_c_20 Rep_1967_c_20_11 14375 15058 + 9.B.27.1.1
pfam Rep_1967_c_20 Rep_1967_c_20_12 15059 16042 + CCG | Fer4_8 | Fer4_17
pfam Rep_1967_c_20 Rep_1967_c_20_13 16098 17165 + APH
TC Rep_1967_c_20 Rep_1967_c_20_14 17214 18629 - 2.A.22.5.3
STP Rep_1967_c_20 Rep_1967_c_20_15 18874 19611 + TetR_N
NULL(UNKNOWN) Rep_1967_c_20 Rep_1967_c_20_16 19735 20787 + NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_1967_c_20 Rep_1967_c_20_17 21152 22975 + 2.A.58.2.2
TC Rep_1967_c_20 Rep_1967_c_20_18 23103 24122 + 9.B.157.1.1
Gene ID: Rep_1967_c_20_10
Type: CAZyme
Location: 12450 - 14159 (-)
Gene ID: Rep_1967_c_20_11
Type: TC
Location: 14375 - 15058 (+)
Gene ID: Rep_1967_c_20_12
Type: pfam
Location: 15059 - 16042 (+)
Gene ID: Rep_1967_c_20_13
Type: pfam
Location: 16098 - 17165 (+)
Gene ID: Rep_1967_c_20_14
Type: TC
Location: 17214 - 18629 (-)
Gene ID: Rep_1967_c_20_15
Type: STP
Location: 18874 - 19611 (+)
Gene ID: Rep_1967_c_20_16
Type:
Location: 19735 - 20787 (+)
Gene ID: Rep_1967_c_20_17
Type: TC
Location: 21152 - 22975 (+)
Gene ID: Rep_1967_c_20_18
Type: TC
Location: 23103 - 24122 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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