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Cluster: Rep_1956_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_1956_c_1 Rep_1956_c_1_59 62121 63359 - GT4
pfam Rep_1956_c_1 Rep_1956_c_1_60 63365 64021 - PglD_N
TC Rep_1956_c_1 Rep_1956_c_1_61 64008 64643 - 9.B.18.1.2
STP Rep_1956_c_1 Rep_1956_c_1_62 64640 65794 - Aminotran_1_2
TC Rep_1956_c_1 Rep_1956_c_1_63 65807 67627 - 9.B.18.2.1
TF Rep_1956_c_1 Rep_1956_c_1_64 68320 68694 + HTH_3
TC Rep_1956_c_1 Rep_1956_c_1_65 68793 70193 - 2.A.66.1.32
pfam Rep_1956_c_1 Rep_1956_c_1_66 70301 70783 - Pro_isomerase
STP Rep_1956_c_1 Rep_1956_c_1_67 70799 71248 - NUDIX
TC Rep_1956_c_1 Rep_1956_c_1_68 71239 71808 - 2.A.51.1.6
TC Rep_1956_c_1 Rep_1956_c_1_69 71805 72458 - 2.A.51.1.6
Gene ID: Rep_1956_c_1_59
Type: CAZyme
Location: 62121 - 63359 (-)
Gene ID: Rep_1956_c_1_60
Type: pfam
Location: 63365 - 64021 (-)
Gene ID: Rep_1956_c_1_61
Type: TC
Location: 64008 - 64643 (-)
Gene ID: Rep_1956_c_1_62
Type: STP
Location: 64640 - 65794 (-)
Gene ID: Rep_1956_c_1_63
Type: TC
Location: 65807 - 67627 (-)
Gene ID: Rep_1956_c_1_64
Type: TF
Location: 68320 - 68694 (+)
Gene ID: Rep_1956_c_1_65
Type: TC
Location: 68793 - 70193 (-)
Gene ID: Rep_1956_c_1_66
Type: pfam
Location: 70301 - 70783 (-)
Gene ID: Rep_1956_c_1_67
Type: STP
Location: 70799 - 71248 (-)
Gene ID: Rep_1956_c_1_68
Type: TC
Location: 71239 - 71808 (-)
Gene ID: Rep_1956_c_1_69
Type: TC
Location: 71805 - 72458 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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