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Cluster: Rep_1952_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_1952_c_0 Rep_1952_c_0_64 68688 70103 + 2.A.47.1.8
TF Rep_1952_c_0 Rep_1952_c_0_65 70258 71133 + HTH_1
peptidase Rep_1952_c_0 Rep_1952_c_0_66 71146 72237 + M48.UPW
TC Rep_1952_c_0 Rep_1952_c_0_67 72564 74048 + 3.A.1.26.2
TC Rep_1952_c_0 Rep_1952_c_0_68 74050 74865 + 3.A.1.33.1
pfam Rep_1952_c_0 Rep_1952_c_0_69 74865 75560 + CbiQ
pfam Rep_1952_c_0 Rep_1952_c_0_70 75748 76992 - Fic
CAZyme Rep_1952_c_0 Rep_1952_c_0_71 77303 78127 + CE4
Gene ID: Rep_1952_c_0_64
Type: TC
Location: 68688 - 70103 (+)
Gene ID: Rep_1952_c_0_65
Type: TF
Location: 70258 - 71133 (+)
Gene ID: Rep_1952_c_0_66
Type: peptidase
Location: 71146 - 72237 (+)
Gene ID: Rep_1952_c_0_67
Type: TC
Location: 72564 - 74048 (+)
Gene ID: Rep_1952_c_0_68
Type: TC
Location: 74050 - 74865 (+)
Gene ID: Rep_1952_c_0_69
Type: pfam
Location: 74865 - 75560 (+)
Gene ID: Rep_1952_c_0_70
Type: pfam
Location: 75748 - 76992 (-)
Gene ID: Rep_1952_c_0_71
Type: CAZyme
Location: 77303 - 78127 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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