dbCAN Logo

Cluster: Rep_1950_CGC7

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_1950_c_25 Rep_1950_c_25_6 4138 4959 - CE4
pfam Rep_1950_c_25 Rep_1950_c_25_7 5000 5992 - 2-Hacid_dh | 2-Hacid_dh_C
NULL(UNKNOWN) Rep_1950_c_25 Rep_1950_c_25_8 6037 6354 - NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_1950_c_25 Rep_1950_c_25_9 6360 6932 - 2.A.51.1.6
TC Rep_1950_c_25 Rep_1950_c_25_10 6945 7520 - 2.A.51.1.6
TF Rep_1950_c_25 Rep_1950_c_25_11 7656 8525 + HTH_1
pfam Rep_1950_c_25 Rep_1950_c_25_12 8561 9664 - Radical_SAM
TC Rep_1950_c_25 Rep_1950_c_25_13 9675 10943 - 2.A.40.1.1
TC Rep_1950_c_25 Rep_1950_c_25_14 10971 12206 - 2.A.103.1.3
Gene ID: Rep_1950_c_25_6
Type: CAZyme
Location: 4138 - 4959 (-)
Gene ID: Rep_1950_c_25_7
Type: pfam
Location: 5000 - 5992 (-)
Gene ID: Rep_1950_c_25_8
Type:
Location: 6037 - 6354 (-)
Gene ID: Rep_1950_c_25_9
Type: TC
Location: 6360 - 6932 (-)
Gene ID: Rep_1950_c_25_10
Type: TC
Location: 6945 - 7520 (-)
Gene ID: Rep_1950_c_25_11
Type: TF
Location: 7656 - 8525 (+)
Gene ID: Rep_1950_c_25_12
Type: pfam
Location: 8561 - 9664 (-)
Gene ID: Rep_1950_c_25_13
Type: TC
Location: 9675 - 10943 (-)
Gene ID: Rep_1950_c_25_14
Type: TC
Location: 10971 - 12206 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

← Back to Cluster List