Cluster: Rep_1940_CGC4
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_1940
- CGC Family ID: CGCFAM_00077
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_1940_c_9 | Rep_1940_c_9_14 | 14430 | 15647 | - | 3.A.1.122.2 |
| TC | Rep_1940_c_9 | Rep_1940_c_9_15 | 15637 | 16341 | - | 3.A.1.122.2 |
| pfam | Rep_1940_c_9 | Rep_1940_c_9_16 | 16355 | 17482 | - | HlyD_3 | Biotin_lipoyl_2 | HlyD_D23 |
| TC | Rep_1940_c_9 | Rep_1940_c_9_17 | 17673 | 18833 | + | 2.A.39.1.3 |
| CAZyme | Rep_1940_c_9 | Rep_1940_c_9_18 | 18906 | 20966 | - | GT51 |
| TC | Rep_1940_c_9 | Rep_1940_c_9_19 | 21287 | 23698 | + | 8.A.7.1.5 |
Gene ID: Rep_1940_c_9_14
Type: TC
Location: 14430 - 15647 (-)
Type: TC
Location: 14430 - 15647 (-)
Gene ID: Rep_1940_c_9_15
Type: TC
Location: 15637 - 16341 (-)
Type: TC
Location: 15637 - 16341 (-)
Gene ID: Rep_1940_c_9_16
Type: pfam
Location: 16355 - 17482 (-)
Type: pfam
Location: 16355 - 17482 (-)
Gene ID: Rep_1940_c_9_17
Type: TC
Location: 17673 - 18833 (+)
Type: TC
Location: 17673 - 18833 (+)
Gene ID: Rep_1940_c_9_18
Type: CAZyme
Location: 18906 - 20966 (-)
Type: CAZyme
Location: 18906 - 20966 (-)
Gene ID: Rep_1940_c_9_19
Type: TC
Location: 21287 - 23698 (+)
Type: TC
Location: 21287 - 23698 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_C
Class
Negativicutes
Order
Veillonellales
Family
Megasphaeraceae
Genus
Megasphaera
Species
Megasphaera sp900548635
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.