Cluster: Rep_1940_CGC2
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_1940
- CGC Family ID: CGCFAM_01128
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_1940_c_5 | Rep_1940_c_5_2 | 852 | 2219 | + | 2.A.3.1.3 |
| TC | Rep_1940_c_5 | Rep_1940_c_5_3 | 2369 | 3373 | + | 3.A.1.23.1 |
| pfam | Rep_1940_c_5 | Rep_1940_c_5_4 | 3385 | 4194 | + | CbiQ |
| TC | Rep_1940_c_5 | Rep_1940_c_5_5 | 4191 | 4835 | + | 3.A.1.23.7 |
| NULL(UNKNOWN) | Rep_1940_c_5 | Rep_1940_c_5_6 | 5123 | 5317 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_1940_c_5 | Rep_1940_c_5_7 | 5379 | 6578 | - | GH73 |
Gene ID: Rep_1940_c_5_2
Type: TC
Location: 852 - 2219 (+)
Type: TC
Location: 852 - 2219 (+)
Gene ID: Rep_1940_c_5_3
Type: TC
Location: 2369 - 3373 (+)
Type: TC
Location: 2369 - 3373 (+)
Gene ID: Rep_1940_c_5_4
Type: pfam
Location: 3385 - 4194 (+)
Type: pfam
Location: 3385 - 4194 (+)
Gene ID: Rep_1940_c_5_5
Type: TC
Location: 4191 - 4835 (+)
Type: TC
Location: 4191 - 4835 (+)
Gene ID: Rep_1940_c_5_6
Type:
Location: 5123 - 5317 (+)
Type:
Location: 5123 - 5317 (+)
Gene ID: Rep_1940_c_5_7
Type: CAZyme
Location: 5379 - 6578 (-)
Type: CAZyme
Location: 5379 - 6578 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_C
Class
Negativicutes
Order
Veillonellales
Family
Megasphaeraceae
Genus
Megasphaera
Species
Megasphaera sp900548635
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.