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Cluster: Rep_1932_CGC18

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_1932_c_9 Rep_1932_c_9_44 51169 51906 + GT26
pfam Rep_1932_c_9 Rep_1932_c_9_45 51912 52550 + PS_Dcarbxylase
pfam Rep_1932_c_9 Rep_1932_c_9_46 52547 53215 + CDP-OH_P_transf
CAZyme Rep_1932_c_9 Rep_1932_c_9_47 53229 54482 + GT2
pfam Rep_1932_c_9 Rep_1932_c_9_48 54493 55263 + SurE
TC Rep_1932_c_9 Rep_1932_c_9_49 55661 57046 + 2.A.25.1.4
pfam Rep_1932_c_9 Rep_1932_c_9_50 57381 57788 + TatA_B_E
TC Rep_1932_c_9 Rep_1932_c_9_51 57772 58479 + 2.A.64.1.1
TC Rep_1932_c_9 Rep_1932_c_9_52 58612 62046 + 3.B.1.1.1
TC Rep_1932_c_9 Rep_1932_c_9_53 62100 63290 - 2.A.1.2.20
Gene ID: Rep_1932_c_9_44
Type: CAZyme
Location: 51169 - 51906 (+)
Gene ID: Rep_1932_c_9_45
Type: pfam
Location: 51912 - 52550 (+)
Gene ID: Rep_1932_c_9_46
Type: pfam
Location: 52547 - 53215 (+)
Gene ID: Rep_1932_c_9_47
Type: CAZyme
Location: 53229 - 54482 (+)
Gene ID: Rep_1932_c_9_48
Type: pfam
Location: 54493 - 55263 (+)
Gene ID: Rep_1932_c_9_49
Type: TC
Location: 55661 - 57046 (+)
Gene ID: Rep_1932_c_9_50
Type: pfam
Location: 57381 - 57788 (+)
Gene ID: Rep_1932_c_9_51
Type: TC
Location: 57772 - 58479 (+)
Gene ID: Rep_1932_c_9_52
Type: TC
Location: 58612 - 62046 (+)
Gene ID: Rep_1932_c_9_53
Type: TC
Location: 62100 - 63290 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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