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Cluster: Rep_190_CGC9

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_190_c_43 Rep_190_c_43_1 374 3544 + 1.B.14.6.1
pfam Rep_190_c_43 Rep_190_c_43_2 3593 5140 + SusD_RagB | SusD-like_3
CAZyme Rep_190_c_43 Rep_190_c_43_3 5414 7645 + GH3
CAZyme Rep_190_c_43 Rep_190_c_43_4 7653 9914 + GH3
pfam Rep_190_c_43 Rep_190_c_43_5 10154 11920 + DUF6377
pfam Rep_190_c_43 Rep_190_c_43_6 11974 12504 + Lysine_decarbox | LDcluster4
TC Rep_190_c_43 Rep_190_c_43_7 12547 13710 - 2.A.23.2.11
Gene ID: Rep_190_c_43_1
Type: TC
Location: 374 - 3544 (+)
Gene ID: Rep_190_c_43_2
Type: pfam
Location: 3593 - 5140 (+)
Gene ID: Rep_190_c_43_3
Type: CAZyme
Location: 5414 - 7645 (+)
Gene ID: Rep_190_c_43_4
Type: CAZyme
Location: 7653 - 9914 (+)
Gene ID: Rep_190_c_43_5
Type: pfam
Location: 10154 - 11920 (+)
Gene ID: Rep_190_c_43_6
Type: pfam
Location: 11974 - 12504 (+)
Gene ID: Rep_190_c_43_7
Type: TC
Location: 12547 - 13710 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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