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Cluster: Rep_190_CGC5

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_190_c_28 Rep_190_c_28_1 476 2761 - GH3
CAZyme Rep_190_c_28 Rep_190_c_28_2 3044 4090 - GH53
pfam Rep_190_c_28 Rep_190_c_28_3 4111 5748 - SusE | DUF5111 | DUF5111
TC Rep_190_c_28 Rep_190_c_28_4 5768 7345 - 8.A.46.1.1
TC Rep_190_c_28 Rep_190_c_28_5 7381 10335 - 1.B.14.6.1
NULL(UNKNOWN) Rep_190_c_28 Rep_190_c_28_6 10400 10561 + NULL(UNKNOWN)
[View Structural Homologs]
TF Rep_190_c_28 Rep_190_c_28_7 10501 14427 - HTH_AraC
CAZyme Rep_190_c_28 Rep_190_c_28_8 14938 17376 - GH95
Gene ID: Rep_190_c_28_1
Type: CAZyme
Location: 476 - 2761 (-)
Gene ID: Rep_190_c_28_2
Type: CAZyme
Location: 3044 - 4090 (-)
Gene ID: Rep_190_c_28_3
Type: pfam
Location: 4111 - 5748 (-)
Gene ID: Rep_190_c_28_4
Type: TC
Location: 5768 - 7345 (-)
Gene ID: Rep_190_c_28_5
Type: TC
Location: 7381 - 10335 (-)
Gene ID: Rep_190_c_28_6
Type:
Location: 10400 - 10561 (+)
Gene ID: Rep_190_c_28_7
Type: TF
Location: 10501 - 14427 (-)
Gene ID: Rep_190_c_28_8
Type: CAZyme
Location: 14938 - 17376 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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