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Cluster: Rep_190_CGC31

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_190_c_311 Rep_190_c_311_2 3148 5424 + GH92
TC Rep_190_c_311 Rep_190_c_311_3 5757 9071 + 1.B.14.6.2
TC Rep_190_c_311 Rep_190_c_311_4 9112 11109 + 8.A.46.2.1
pfam Rep_190_c_311 Rep_190_c_311_5 11127 12386 + Glyco_tran_WbsX
pfam Rep_190_c_311 Rep_190_c_311_6 12399 14501 + BACON | BACON | BACON | LRR_5 | LRR_5
CAZyme Rep_190_c_311 Rep_190_c_311_7 14809 16809 + CBM6 | GH43_2
CAZyme Rep_190_c_311 Rep_190_c_311_8 17016 20705 + GH2
Gene ID: Rep_190_c_311_2
Type: CAZyme
Location: 3148 - 5424 (+)
Gene ID: Rep_190_c_311_3
Type: TC
Location: 5757 - 9071 (+)
Gene ID: Rep_190_c_311_4
Type: TC
Location: 9112 - 11109 (+)
Gene ID: Rep_190_c_311_5
Type: pfam
Location: 11127 - 12386 (+)
Gene ID: Rep_190_c_311_6
Type: pfam
Location: 12399 - 14501 (+)
Gene ID: Rep_190_c_311_7
Type: CAZyme
Location: 14809 - 16809 (+)
Gene ID: Rep_190_c_311_8
Type: CAZyme
Location: 17016 - 20705 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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