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Cluster: Rep_1899_CGC7

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_1899_c_1 Rep_1899_c_1_870 634661 635896 - GH9
TC Rep_1899_c_1 Rep_1899_c_1_871 635956 636339 - 4.A.3.2.5
pfam Rep_1899_c_1 Rep_1899_c_1_872 636528 636983 - AdoMet_dc
TC Rep_1899_c_1 Rep_1899_c_1_873 637940 639301 - 1.B.23.1.3
CAZyme Rep_1899_c_1 Rep_1899_c_1_874 639529 641025 - GH77
pfam Rep_1899_c_1 Rep_1899_c_1_875 641028 641879 - Exo_endo_phos
TC Rep_1899_c_1 Rep_1899_c_1_876 642313 644211 - 4.A.1.1.11
TF Rep_1899_c_1 Rep_1899_c_1_877 644516 645580 + LacI
TC Rep_1899_c_1 Rep_1899_c_1_878 645689 647140 - 3.A.3.32.4
TC Rep_1899_c_1 Rep_1899_c_1_879 647109 647777 - 3.A.3.32.4
Gene ID: Rep_1899_c_1_870
Type: CAZyme
Location: 634661 - 635896 (-)
Gene ID: Rep_1899_c_1_871
Type: TC
Location: 635956 - 636339 (-)
Gene ID: Rep_1899_c_1_872
Type: pfam
Location: 636528 - 636983 (-)
Gene ID: Rep_1899_c_1_873
Type: TC
Location: 637940 - 639301 (-)
Gene ID: Rep_1899_c_1_874
Type: CAZyme
Location: 639529 - 641025 (-)
Gene ID: Rep_1899_c_1_875
Type: pfam
Location: 641028 - 641879 (-)
Gene ID: Rep_1899_c_1_876
Type: TC
Location: 642313 - 644211 (-)
Gene ID: Rep_1899_c_1_877
Type: TF
Location: 644516 - 645580 (+)
Gene ID: Rep_1899_c_1_878
Type: TC
Location: 645689 - 647140 (-)
Gene ID: Rep_1899_c_1_879
Type: TC
Location: 647109 - 647777 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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