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Cluster: Rep_1899_CGC6

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_1899_c_1 Rep_1899_c_1_858 623355 624710 - 2.A.22.5.3
CAZyme Rep_1899_c_1 Rep_1899_c_1_859 624857 625426 - GH1
CAZyme Rep_1899_c_1 Rep_1899_c_1_860 625416 626306 - GH1
CAZyme Rep_1899_c_1 Rep_1899_c_1_861 626320 627138 - GH16_21
pfam Rep_1899_c_1 Rep_1899_c_1_862 627160 627372 - PTS_IIA
pfam Rep_1899_c_1 Rep_1899_c_1_863 627314 627481 - PTS_IIA
TC Rep_1899_c_1 Rep_1899_c_1_864 627555 628991 - 1.B.23.1.3
TC Rep_1899_c_1 Rep_1899_c_1_865 628981 630306 - 4.A.3.2.2
Gene ID: Rep_1899_c_1_858
Type: TC
Location: 623355 - 624710 (-)
Gene ID: Rep_1899_c_1_859
Type: CAZyme
Location: 624857 - 625426 (-)
Gene ID: Rep_1899_c_1_860
Type: CAZyme
Location: 625416 - 626306 (-)
Gene ID: Rep_1899_c_1_861
Type: CAZyme
Location: 626320 - 627138 (-)
Gene ID: Rep_1899_c_1_862
Type: pfam
Location: 627160 - 627372 (-)
Gene ID: Rep_1899_c_1_863
Type: pfam
Location: 627314 - 627481 (-)
Gene ID: Rep_1899_c_1_864
Type: TC
Location: 627555 - 628991 (-)
Gene ID: Rep_1899_c_1_865
Type: TC
Location: 628981 - 630306 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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