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Cluster: Rep_1899_CGC17

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_1899_c_1 Rep_1899_c_1_2675 2113537 2114961 + 1.B.23.1.23
NULL(UNKNOWN) Rep_1899_c_1 Rep_1899_c_1_2676 2114983 2115123 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_1899_c_1 Rep_1899_c_1_2677 2115068 2116870 + CBM61 | GH53
TC Rep_1899_c_1 Rep_1899_c_1_2678 2117086 2117640 - 2.A.38.4.4
TC Rep_1899_c_1 Rep_1899_c_1_2679 2117660 2118907 - 2.A.38.4.1
CAZyme Rep_1899_c_1 Rep_1899_c_1_2680 2119561 2120718 + GH1
pfam Rep_1899_c_1 Rep_1899_c_1_2681 2120702 2120980 + Glyco_hydro_1
TC Rep_1899_c_1 Rep_1899_c_1_2682 2121032 2122720 + 4.A.3.1.1
TC Rep_1899_c_1 Rep_1899_c_1_2683 2123094 2123708 + 2.A.115.2.14
TC Rep_1899_c_1 Rep_1899_c_1_2684 2123769 2124068 + 2.A.2.2.1
TC Rep_1899_c_1 Rep_1899_c_1_2685 2124041 2124862 + 2.A.2.2.1
TC Rep_1899_c_1 Rep_1899_c_1_2686 2124834 2125151 + 2.A.2.2.2
CAZyme Rep_1899_c_1 Rep_1899_c_1_2687 2125260 2127500 + GH36
TF Rep_1899_c_1 Rep_1899_c_1_2688 2127527 2128378 - HTH_AraC | HTH_AraC
CAZyme Rep_1899_c_1 Rep_1899_c_1_2689 2128471 2130675 + GH2
Gene ID: Rep_1899_c_1_2675
Type: TC
Location: 2113537 - 2114961 (+)
Gene ID: Rep_1899_c_1_2676
Type:
Location: 2114983 - 2115123 (+)
Gene ID: Rep_1899_c_1_2677
Type: CAZyme
Location: 2115068 - 2116870 (+)
Gene ID: Rep_1899_c_1_2678
Type: TC
Location: 2117086 - 2117640 (-)
Gene ID: Rep_1899_c_1_2679
Type: TC
Location: 2117660 - 2118907 (-)
Gene ID: Rep_1899_c_1_2680
Type: CAZyme
Location: 2119561 - 2120718 (+)
Gene ID: Rep_1899_c_1_2681
Type: pfam
Location: 2120702 - 2120980 (+)
Gene ID: Rep_1899_c_1_2682
Type: TC
Location: 2121032 - 2122720 (+)
Gene ID: Rep_1899_c_1_2683
Type: TC
Location: 2123094 - 2123708 (+)
Gene ID: Rep_1899_c_1_2684
Type: TC
Location: 2123769 - 2124068 (+)
Gene ID: Rep_1899_c_1_2685
Type: TC
Location: 2124041 - 2124862 (+)
Gene ID: Rep_1899_c_1_2686
Type: TC
Location: 2124834 - 2125151 (+)
Gene ID: Rep_1899_c_1_2687
Type: CAZyme
Location: 2125260 - 2127500 (+)
Gene ID: Rep_1899_c_1_2688
Type: TF
Location: 2127527 - 2128378 (-)
Gene ID: Rep_1899_c_1_2689
Type: CAZyme
Location: 2128471 - 2130675 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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