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Cluster: Rep_1899_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_1899_c_1 Rep_1899_c_1_170 103764 104294 + GT4
CAZyme Rep_1899_c_1 Rep_1899_c_1_171 104355 104777 + GT2
CAZyme Rep_1899_c_1 Rep_1899_c_1_172 105145 105951 + GT32
CAZyme Rep_1899_c_1 Rep_1899_c_1_173 105981 106313 + GT2
NULL(UNKNOWN) Rep_1899_c_1 Rep_1899_c_1_174 106444 106977 + NULL(UNKNOWN)
[View Structural Homologs]
pfam Rep_1899_c_1 Rep_1899_c_1_175 106988 107722 + Glyco_transf_4 | Glyco_trans_4_2 | Glyco_trans_4_4
CAZyme Rep_1899_c_1 Rep_1899_c_1_176 107737 108099 + GT4
NULL(UNKNOWN) Rep_1899_c_1 Rep_1899_c_1_177 108108 108464 + NULL(UNKNOWN)
[View Structural Homologs]
pfam Rep_1899_c_1 Rep_1899_c_1_178 108412 109743 + Sulfatase
TC Rep_1899_c_1 Rep_1899_c_1_179 110130 111164 + 9.B.18.1.3
Gene ID: Rep_1899_c_1_170
Type: CAZyme
Location: 103764 - 104294 (+)
Gene ID: Rep_1899_c_1_171
Type: CAZyme
Location: 104355 - 104777 (+)
Gene ID: Rep_1899_c_1_172
Type: CAZyme
Location: 105145 - 105951 (+)
Gene ID: Rep_1899_c_1_173
Type: CAZyme
Location: 105981 - 106313 (+)
Gene ID: Rep_1899_c_1_174
Type:
Location: 106444 - 106977 (+)
Gene ID: Rep_1899_c_1_175
Type: pfam
Location: 106988 - 107722 (+)
Gene ID: Rep_1899_c_1_176
Type: CAZyme
Location: 107737 - 108099 (+)
Gene ID: Rep_1899_c_1_177
Type:
Location: 108108 - 108464 (+)
Gene ID: Rep_1899_c_1_178
Type: pfam
Location: 108412 - 109743 (+)
Gene ID: Rep_1899_c_1_179
Type: TC
Location: 110130 - 111164 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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