Cluster: Rep_1885_CGC2
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_1885
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_1885_c_20 | Rep_1885_c_20_16 | 15841 | 16566 | + | GT26 |
| pfam | Rep_1885_c_20 | Rep_1885_c_20_17 | 16619 | 17254 | + | PS_Dcarbxylase |
| pfam | Rep_1885_c_20 | Rep_1885_c_20_18 | 17247 | 17918 | + | CDP-OH_P_transf |
| CAZyme | Rep_1885_c_20 | Rep_1885_c_20_19 | 17931 | 19199 | + | GT2 |
| TC | Rep_1885_c_20 | Rep_1885_c_20_20 | 19367 | 21253 | + | 9.B.97.5.1 |
| TC | Rep_1885_c_20 | Rep_1885_c_20_21 | 21462 | 22475 | + | 3.A.15.1.1 |
| TC | Rep_1885_c_20 | Rep_1885_c_20_22 | 22472 | 23464 | + | 3.A.15.2.1 |
Gene ID: Rep_1885_c_20_16
Type: CAZyme
Location: 15841 - 16566 (+)
Type: CAZyme
Location: 15841 - 16566 (+)
Gene ID: Rep_1885_c_20_17
Type: pfam
Location: 16619 - 17254 (+)
Type: pfam
Location: 16619 - 17254 (+)
Gene ID: Rep_1885_c_20_18
Type: pfam
Location: 17247 - 17918 (+)
Type: pfam
Location: 17247 - 17918 (+)
Gene ID: Rep_1885_c_20_19
Type: CAZyme
Location: 17931 - 19199 (+)
Type: CAZyme
Location: 17931 - 19199 (+)
Gene ID: Rep_1885_c_20_20
Type: TC
Location: 19367 - 21253 (+)
Type: TC
Location: 19367 - 21253 (+)
Gene ID: Rep_1885_c_20_21
Type: TC
Location: 21462 - 22475 (+)
Type: TC
Location: 21462 - 22475 (+)
Gene ID: Rep_1885_c_20_22
Type: TC
Location: 22472 - 23464 (+)
Type: TC
Location: 22472 - 23464 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_C
Class
Negativicutes
Order
Veillonellales
Family
Veillonellaceae
Genus
F0422
Species
F0422 sp003999875
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.