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Cluster: Rep_1885_CGC10

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_1885_c_42 Rep_1885_c_42_76 89441 90382 + 3.A.1.15.8
TC Rep_1885_c_42 Rep_1885_c_42_77 90379 91128 + 3.A.1.15.8
TC Rep_1885_c_42 Rep_1885_c_42_78 91137 91985 + 3.A.1.15.8
TC Rep_1885_c_42 Rep_1885_c_42_79 91982 92827 + 3.A.1.15.8
TC Rep_1885_c_42 Rep_1885_c_42_80 93023 95107 - 2.A.67.4.1
NULL(UNKNOWN) Rep_1885_c_42 Rep_1885_c_42_81 95304 96083 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_1885_c_42 Rep_1885_c_42_82 96228 97040 - GT51
pfam Rep_1885_c_42 Rep_1885_c_42_83 97397 98611 + Arginosuc_synth | Arginosuc_syn_C
pfam Rep_1885_c_42 Rep_1885_c_42_84 98611 100032 + Lyase_1 | ASL_C2
TC Rep_1885_c_42 Rep_1885_c_42_85 100190 101257 - 9.B.145.1.2
pfam Rep_1885_c_42 Rep_1885_c_42_86 101591 102346 + Exo_endo_phos
TC Rep_1885_c_42 Rep_1885_c_42_87 102362 103030 + 3.A.1.139.2
TC Rep_1885_c_42 Rep_1885_c_42_88 103017 103790 + 3.A.1.139.2
Gene ID: Rep_1885_c_42_76
Type: TC
Location: 89441 - 90382 (+)
Gene ID: Rep_1885_c_42_77
Type: TC
Location: 90379 - 91128 (+)
Gene ID: Rep_1885_c_42_78
Type: TC
Location: 91137 - 91985 (+)
Gene ID: Rep_1885_c_42_79
Type: TC
Location: 91982 - 92827 (+)
Gene ID: Rep_1885_c_42_80
Type: TC
Location: 93023 - 95107 (-)
Gene ID: Rep_1885_c_42_81
Type:
Location: 95304 - 96083 (+)
Gene ID: Rep_1885_c_42_82
Type: CAZyme
Location: 96228 - 97040 (-)
Gene ID: Rep_1885_c_42_83
Type: pfam
Location: 97397 - 98611 (+)
Gene ID: Rep_1885_c_42_84
Type: pfam
Location: 98611 - 100032 (+)
Gene ID: Rep_1885_c_42_85
Type: TC
Location: 100190 - 101257 (-)
Gene ID: Rep_1885_c_42_86
Type: pfam
Location: 101591 - 102346 (+)
Gene ID: Rep_1885_c_42_87
Type: TC
Location: 102362 - 103030 (+)
Gene ID: Rep_1885_c_42_88
Type: TC
Location: 103017 - 103790 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacillota_C
→
Class
Negativicutes
→
Order
Veillonellales
→
Family
Veillonellaceae
→
Genus
F0422
→
Species
F0422 sp003999875

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_1885_c_42_85 vegetarian > omnivore 1.72989 0.01156

🧭 Explore Read Mapping of CGC

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